Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04980 and MMP_RS04985 are separated by 35 nucleotides MMP_RS04985 and MMP_RS04990 overlap by 4 nucleotides MMP_RS04990 and MMP_RS04995 are separated by 124 nucleotides MMP_RS04995 and MMP_RS05000 are separated by 49 nucleotides
MMP_RS04980: MMP_RS04980 - DUF2193 domain-containing protein, at 949,611 to 951,110
_RS04980
MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361
_RS04985
MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077
_RS04990
MMP_RS04995: MMP_RS04995 - hypothetical protein, at 952,202 to 952,459
_RS04995
MMP_RS05000: MMP_RS05000 - FmdE family protein, at 952,509 to 953,087
_RS05000
Position (kb) 951
952
953 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 950.359 kb on - strand, within MMP_RS04980 at 950.360 kb on + strand, within MMP_RS04980 at 950.401 kb on - strand, within MMP_RS04980 at 950.406 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.522 kb on - strand, within MMP_RS04980 at 950.523 kb on + strand, within MMP_RS04980 at 950.566 kb on - strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.648 kb on + strand, within MMP_RS04980 at 950.677 kb on + strand, within MMP_RS04980 at 950.681 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.747 kb on - strand, within MMP_RS04980 at 950.761 kb on - strand, within MMP_RS04980 at 950.865 kb on + strand, within MMP_RS04980 at 950.884 kb on + strand, within MMP_RS04980 at 951.085 kb on + strand at 951.107 kb on + strand at 951.108 kb on - strand at 951.113 kb on - strand at 951.114 kb on + strand at 951.120 kb on + strand at 951.156 kb on + strand at 951.238 kb on + strand, within MMP_RS04985 at 951.238 kb on + strand, within MMP_RS04985 at 951.240 kb on - strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.335 kb on + strand, within MMP_RS04985 at 951.565 kb on + strand, within MMP_RS04990 at 951.565 kb on + strand, within MMP_RS04990 at 951.636 kb on - strand, within MMP_RS04990 at 951.644 kb on - strand, within MMP_RS04990 at 951.647 kb on + strand, within MMP_RS04990 at 951.648 kb on - strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.762 kb on + strand, within MMP_RS04990 at 951.973 kb on + strand, within MMP_RS04990 at 951.995 kb on + strand, within MMP_RS04990 at 951.998 kb on + strand, within MMP_RS04990 at 952.007 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.011 kb on - strand at 952.011 kb on - strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.038 kb on + strand at 952.038 kb on + strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.075 kb on - strand at 952.075 kb on - strand at 952.128 kb on + strand at 952.176 kb on + strand at 952.176 kb on + strand at 952.180 kb on + strand at 952.199 kb on + strand at 952.318 kb on - strand, within MMP_RS04995 at 952.319 kb on + strand, within MMP_RS04995 at 952.375 kb on - strand, within MMP_RS04995 at 952.387 kb on + strand, within MMP_RS04995 at 952.392 kb on + strand, within MMP_RS04995 at 952.392 kb on + strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.430 kb on - strand, within MMP_RS04995 at 952.436 kb on - strand at 952.436 kb on - strand at 952.456 kb on + strand at 952.487 kb on - strand at 952.501 kb on - strand at 952.510 kb on - strand at 952.546 kb on + strand at 952.559 kb on - strand at 952.560 kb on + strand at 952.580 kb on - strand, within MMP_RS05000 at 952.659 kb on - strand, within MMP_RS05000 at 952.659 kb on - strand, within MMP_RS05000 at 952.704 kb on + strand, within MMP_RS05000 at 952.855 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.938 kb on + strand, within MMP_RS05000 at 952.938 kb on + strand, within MMP_RS05000 at 952.947 kb on + strand, within MMP_RS05000 at 952.957 kb on + strand, within MMP_RS05000 at 953.005 kb on - strand, within MMP_RS05000 at 953.005 kb on - strand, within MMP_RS05000 at 953.006 kb on + strand, within MMP_RS05000 at 953.031 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 950,359 - MMP_RS04980 0.50 -1.1 950,360 + MMP_RS04980 0.50 +0.1 950,401 - MMP_RS04980 0.53 +0.1 950,406 + MMP_RS04980 0.53 -0.8 950,416 + MMP_RS04980 0.54 +1.7 950,416 + MMP_RS04980 0.54 -0.7 950,416 + MMP_RS04980 0.54 -2.0 950,416 + MMP_RS04980 0.54 -2.0 950,522 - MMP_RS04980 0.61 -0.2 950,523 + MMP_RS04980 0.61 -5.2 950,566 - MMP_RS04980 0.64 -2.3 950,567 + MMP_RS04980 0.64 -1.3 950,567 + MMP_RS04980 0.64 +0.2 950,609 - MMP_RS04980 0.67 -3.4 950,609 - MMP_RS04980 0.67 +1.1 950,648 + MMP_RS04980 0.69 -0.8 950,677 + MMP_RS04980 0.71 -3.6 950,681 + MMP_RS04980 0.71 +0.5 950,746 + MMP_RS04980 0.76 -0.5 950,746 + MMP_RS04980 0.76 +0.7 950,747 - MMP_RS04980 0.76 -2.4 950,761 - MMP_RS04980 0.77 -0.2 950,865 + MMP_RS04980 0.84 -0.1 950,884 + MMP_RS04980 0.85 -0.8 951,085 + -1.0 951,107 + +0.6 951,108 - +0.7 951,113 - +2.3 951,114 + +0.2 951,120 + +0.1 951,156 + -2.3 951,238 + MMP_RS04985 0.43 -0.4 951,238 + MMP_RS04985 0.43 -1.0 951,240 - MMP_RS04985 0.44 +0.8 951,241 + MMP_RS04985 0.44 +0.1 951,241 + MMP_RS04985 0.44 -1.3 951,335 + MMP_RS04985 0.88 +0.0 951,565 + MMP_RS04990 0.29 -3.3 951,565 + MMP_RS04990 0.29 -0.9 951,636 - MMP_RS04990 0.39 -3.0 951,644 - MMP_RS04990 0.40 +0.0 951,647 + MMP_RS04990 0.40 -0.5 951,648 - MMP_RS04990 0.40 -0.4 951,649 + MMP_RS04990 0.40 +0.1 951,649 + MMP_RS04990 0.40 -1.2 951,762 + MMP_RS04990 0.56 -1.8 951,973 + MMP_RS04990 0.85 -2.1 951,995 + MMP_RS04990 0.88 -1.4 951,998 + MMP_RS04990 0.89 -2.4 952,007 - -1.5 952,009 - -1.0 952,009 - -3.5 952,009 - -1.8 952,009 - +0.7 952,010 + -2.0 952,010 + -1.5 952,010 + -2.5 952,011 - -0.6 952,011 - -3.5 952,012 + -2.3 952,012 + -1.7 952,012 + -2.5 952,012 + -0.3 952,037 - -1.2 952,037 - +0.8 952,037 - -1.8 952,037 - +0.9 952,038 + +0.9 952,038 + -0.8 952,054 - -1.2 952,054 - -0.7 952,054 - -1.4 952,075 - -0.5 952,075 - +1.4 952,128 + -0.5 952,176 + -2.2 952,176 + +0.2 952,180 + +0.9 952,199 + +1.9 952,318 - MMP_RS04995 0.45 -0.3 952,319 + MMP_RS04995 0.45 +0.1 952,375 - MMP_RS04995 0.67 -0.4 952,387 + MMP_RS04995 0.72 -1.5 952,392 + MMP_RS04995 0.74 -2.1 952,392 + MMP_RS04995 0.74 +0.4 952,393 - MMP_RS04995 0.74 +0.3 952,393 - MMP_RS04995 0.74 +0.1 952,393 - MMP_RS04995 0.74 +1.6 952,394 + MMP_RS04995 0.74 -1.5 952,394 + MMP_RS04995 0.74 +0.5 952,394 + MMP_RS04995 0.74 -0.7 952,394 + MMP_RS04995 0.74 -0.7 952,394 + MMP_RS04995 0.74 +0.2 952,394 + MMP_RS04995 0.74 +0.3 952,394 + MMP_RS04995 0.74 +0.7 952,430 - MMP_RS04995 0.88 +0.1 952,436 - -0.5 952,436 - -1.1 952,456 + +1.3 952,487 - +1.1 952,501 - -3.0 952,510 - -0.3 952,546 + -2.0 952,559 - -3.4 952,560 + -0.6 952,580 - MMP_RS05000 0.12 +0.4 952,659 - MMP_RS05000 0.26 -1.5 952,659 - MMP_RS05000 0.26 +2.9 952,704 + MMP_RS05000 0.34 -2.3 952,855 - MMP_RS05000 0.60 +0.9 952,934 - MMP_RS05000 0.73 -0.9 952,934 - MMP_RS05000 0.73 +0.9 952,934 - MMP_RS05000 0.73 +0.4 952,938 + MMP_RS05000 0.74 +0.3 952,938 + MMP_RS05000 0.74 +1.1 952,947 + MMP_RS05000 0.76 -1.5 952,957 + MMP_RS05000 0.77 -1.5 953,005 - MMP_RS05000 0.86 -0.4 953,005 - MMP_RS05000 0.86 +0.3 953,006 + MMP_RS05000 0.86 -0.6 953,031 + +0.4
Or see this region's nucleotide sequence