Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04590 and MMP_RS04595 are separated by 30 nucleotides MMP_RS04595 and MMP_RS04600 are separated by 109 nucleotides MMP_RS04600 and MMP_RS04605 are separated by 154 nucleotides
MMP_RS04590: MMP_RS04590 - hypothetical protein, at 876,371 to 877,336
_RS04590
MMP_RS04595: MMP_RS04595 - hypothetical protein, at 877,367 to 877,864
_RS04595
MMP_RS04600: MMP_RS04600 - tetratricopeptide repeat protein, at 877,974 to 879,140
_RS04600
MMP_RS04605: MMP_RS04605 - cobalt ECF transporter T component CbiQ, at 879,295 to 880,062
_RS04605
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 876.998 kb on - strand, within MMP_RS04590 at 877.043 kb on - strand, within MMP_RS04590 at 877.120 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.138 kb on - strand, within MMP_RS04590 at 877.170 kb on - strand, within MMP_RS04590 at 877.174 kb on - strand, within MMP_RS04590 at 877.209 kb on + strand, within MMP_RS04590 at 877.233 kb on + strand, within MMP_RS04590 at 877.272 kb on + strand at 877.363 kb on - strand at 877.482 kb on + strand, within MMP_RS04595 at 877.539 kb on - strand, within MMP_RS04595 at 877.550 kb on - strand, within MMP_RS04595 at 877.560 kb on + strand, within MMP_RS04595 at 877.571 kb on - strand, within MMP_RS04595 at 877.743 kb on + strand, within MMP_RS04595 at 877.766 kb on + strand, within MMP_RS04595 at 877.846 kb on + strand at 877.846 kb on + strand at 877.895 kb on - strand at 877.910 kb on - strand at 877.915 kb on - strand at 877.957 kb on - strand at 877.960 kb on - strand at 877.994 kb on - strand at 877.995 kb on + strand at 877.995 kb on + strand at 877.997 kb on - strand at 878.013 kb on - strand at 878.013 kb on - strand at 878.013 kb on - strand at 878.027 kb on + strand at 878.066 kb on + strand at 878.067 kb on - strand at 878.118 kb on + strand, within MMP_RS04600 at 878.118 kb on + strand, within MMP_RS04600 at 878.137 kb on + strand, within MMP_RS04600 at 878.137 kb on + strand, within MMP_RS04600 at 878.169 kb on - strand, within MMP_RS04600 at 878.169 kb on - strand, within MMP_RS04600 at 878.171 kb on - strand, within MMP_RS04600 at 878.171 kb on - strand, within MMP_RS04600 at 878.172 kb on + strand, within MMP_RS04600 at 878.173 kb on - strand, within MMP_RS04600 at 878.182 kb on - strand, within MMP_RS04600 at 878.338 kb on - strand, within MMP_RS04600 at 878.339 kb on + strand, within MMP_RS04600 at 878.354 kb on + strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.374 kb on + strand, within MMP_RS04600 at 878.409 kb on - strand, within MMP_RS04600 at 878.410 kb on + strand, within MMP_RS04600 at 878.513 kb on - strand, within MMP_RS04600 at 878.524 kb on + strand, within MMP_RS04600 at 878.528 kb on + strand, within MMP_RS04600 at 878.531 kb on - strand, within MMP_RS04600 at 878.532 kb on + strand, within MMP_RS04600 at 878.532 kb on + strand, within MMP_RS04600 at 878.709 kb on + strand, within MMP_RS04600 at 878.709 kb on + strand, within MMP_RS04600 at 878.710 kb on - strand, within MMP_RS04600 at 878.711 kb on + strand, within MMP_RS04600 at 878.711 kb on + strand, within MMP_RS04600 at 878.728 kb on + strand, within MMP_RS04600 at 878.732 kb on - strand, within MMP_RS04600 at 878.732 kb on - strand, within MMP_RS04600 at 878.735 kb on - strand, within MMP_RS04600 at 878.735 kb on - strand, within MMP_RS04600 at 878.736 kb on + strand, within MMP_RS04600 at 878.738 kb on - strand, within MMP_RS04600 at 878.738 kb on - strand, within MMP_RS04600 at 878.739 kb on + strand, within MMP_RS04600 at 878.740 kb on - strand, within MMP_RS04600 at 878.741 kb on + strand, within MMP_RS04600 at 878.741 kb on + strand, within MMP_RS04600 at 878.765 kb on - strand, within MMP_RS04600 at 878.776 kb on + strand, within MMP_RS04600 at 878.776 kb on + strand, within MMP_RS04600 at 878.779 kb on - strand, within MMP_RS04600 at 878.779 kb on - strand, within MMP_RS04600 at 878.882 kb on - strand, within MMP_RS04600 at 878.891 kb on - strand, within MMP_RS04600 at 878.922 kb on - strand, within MMP_RS04600 at 879.062 kb on - strand at 879.062 kb on - strand at 879.062 kb on - strand at 879.063 kb on + strand at 879.133 kb on + strand at 879.133 kb on + strand at 879.162 kb on + strand at 879.164 kb on + strand at 879.164 kb on + strand at 879.166 kb on - strand at 879.167 kb on + strand at 879.169 kb on - strand at 879.169 kb on - strand at 879.170 kb on + strand at 879.170 kb on + strand at 879.170 kb on + strand at 879.189 kb on - strand at 879.193 kb on - strand at 879.194 kb on + strand at 879.194 kb on + strand at 879.201 kb on - strand at 879.202 kb on + strand at 879.236 kb on + strand at 879.236 kb on + strand at 879.237 kb on - strand at 879.244 kb on + strand at 879.250 kb on + strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.306 kb on - strand at 879.322 kb on - strand at 879.333 kb on - strand at 879.450 kb on + strand, within MMP_RS04605 at 879.563 kb on + strand, within MMP_RS04605 at 879.577 kb on - strand, within MMP_RS04605 at 879.592 kb on + strand, within MMP_RS04605 at 879.656 kb on + strand, within MMP_RS04605 at 879.993 kb on - strand at 880.000 kb on - strand at 880.087 kb on + strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.090 kb on + strand at 880.094 kb on - strand at 880.110 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.122 kb on - strand at 880.128 kb on + strand at 880.132 kb on - strand at 880.132 kb on - strand at 880.139 kb on - strand at 880.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 876,998 - MMP_RS04590 0.65 -0.7 877,043 - MMP_RS04590 0.70 +3.7 877,120 + MMP_RS04590 0.78 -0.6 877,133 + MMP_RS04590 0.79 +1.6 877,133 + MMP_RS04590 0.79 +0.8 877,133 + MMP_RS04590 0.79 +1.9 877,138 - MMP_RS04590 0.79 -1.5 877,170 - MMP_RS04590 0.83 +0.4 877,174 - MMP_RS04590 0.83 -1.5 877,209 + MMP_RS04590 0.87 +0.4 877,233 + MMP_RS04590 0.89 +0.0 877,272 + +0.6 877,363 - +0.1 877,482 + MMP_RS04595 0.23 +1.2 877,539 - MMP_RS04595 0.35 -0.8 877,550 - MMP_RS04595 0.37 +1.8 877,560 + MMP_RS04595 0.39 +0.4 877,571 - MMP_RS04595 0.41 +0.9 877,743 + MMP_RS04595 0.76 -0.3 877,766 + MMP_RS04595 0.80 +0.7 877,846 + +0.3 877,846 + +0.5 877,895 - -0.8 877,910 - -0.2 877,915 - -1.8 877,957 - -0.0 877,960 - +0.9 877,994 - -0.5 877,995 + +0.8 877,995 + +0.6 877,997 - +1.2 878,013 - -0.7 878,013 - +0.3 878,013 - +0.7 878,027 + +0.1 878,066 + +0.1 878,067 - +0.5 878,118 + MMP_RS04600 0.12 -1.6 878,118 + MMP_RS04600 0.12 +1.1 878,137 + MMP_RS04600 0.14 -3.8 878,137 + MMP_RS04600 0.14 -0.1 878,169 - MMP_RS04600 0.17 -1.5 878,169 - MMP_RS04600 0.17 +1.2 878,171 - MMP_RS04600 0.17 -0.2 878,171 - MMP_RS04600 0.17 -1.4 878,172 + MMP_RS04600 0.17 -1.5 878,173 - MMP_RS04600 0.17 +0.6 878,182 - MMP_RS04600 0.18 +0.1 878,338 - MMP_RS04600 0.31 -1.1 878,339 + MMP_RS04600 0.31 +1.3 878,354 + MMP_RS04600 0.33 -1.3 878,373 - MMP_RS04600 0.34 +0.8 878,373 - MMP_RS04600 0.34 +0.5 878,373 - MMP_RS04600 0.34 -0.5 878,374 + MMP_RS04600 0.34 -0.7 878,409 - MMP_RS04600 0.37 -0.8 878,410 + MMP_RS04600 0.37 -0.9 878,513 - MMP_RS04600 0.46 -0.2 878,524 + MMP_RS04600 0.47 +1.3 878,528 + MMP_RS04600 0.47 +2.2 878,531 - MMP_RS04600 0.48 +0.1 878,532 + MMP_RS04600 0.48 +0.4 878,532 + MMP_RS04600 0.48 +0.0 878,709 + MMP_RS04600 0.63 -0.4 878,709 + MMP_RS04600 0.63 +0.4 878,710 - MMP_RS04600 0.63 -0.5 878,711 + MMP_RS04600 0.63 -0.4 878,711 + MMP_RS04600 0.63 +0.1 878,728 + MMP_RS04600 0.65 -1.3 878,732 - MMP_RS04600 0.65 -1.4 878,732 - MMP_RS04600 0.65 -0.9 878,735 - MMP_RS04600 0.65 -0.8 878,735 - MMP_RS04600 0.65 -0.2 878,736 + MMP_RS04600 0.65 -0.8 878,738 - MMP_RS04600 0.65 +0.8 878,738 - MMP_RS04600 0.65 -0.7 878,739 + MMP_RS04600 0.66 +0.5 878,740 - MMP_RS04600 0.66 +0.7 878,741 + MMP_RS04600 0.66 -2.2 878,741 + MMP_RS04600 0.66 -0.4 878,765 - MMP_RS04600 0.68 -2.3 878,776 + MMP_RS04600 0.69 -1.1 878,776 + MMP_RS04600 0.69 -1.0 878,779 - MMP_RS04600 0.69 -2.2 878,779 - MMP_RS04600 0.69 -1.0 878,882 - MMP_RS04600 0.78 -3.1 878,891 - MMP_RS04600 0.79 -0.7 878,922 - MMP_RS04600 0.81 -0.7 879,062 - -0.7 879,062 - +1.1 879,062 - -0.4 879,063 + +0.4 879,133 + -1.1 879,133 + +2.1 879,162 + +0.5 879,164 + -0.1 879,164 + -1.8 879,166 - -0.2 879,167 + -1.8 879,169 - +0.5 879,169 - +1.5 879,170 + +0.6 879,170 + -0.9 879,170 + -0.2 879,189 - -0.8 879,193 - +0.4 879,194 + +0.3 879,194 + +1.5 879,201 - -1.0 879,202 + -2.4 879,236 + +0.7 879,236 + -1.2 879,237 - +0.7 879,244 + +0.5 879,250 + +0.9 879,252 - +0.3 879,252 - +0.9 879,252 - +0.9 879,252 - +0.8 879,252 - +0.2 879,252 - +1.0 879,252 - -0.3 879,253 + +0.5 879,253 + +1.0 879,253 + +0.8 879,306 - +0.2 879,322 - +1.6 879,333 - +1.6 879,450 + MMP_RS04605 0.20 -2.4 879,563 + MMP_RS04605 0.35 +1.7 879,577 - MMP_RS04605 0.37 +2.2 879,592 + MMP_RS04605 0.39 +2.7 879,656 + MMP_RS04605 0.47 +1.5 879,993 - +1.6 880,000 - +1.8 880,087 + +0.7 880,089 - +2.1 880,089 - +0.0 880,089 - -1.0 880,090 + +1.9 880,094 - +0.2 880,110 + +2.3 880,117 + +1.4 880,117 + -0.4 880,117 + +1.2 880,117 + -0.8 880,122 - +0.1 880,128 + +1.1 880,132 - +1.1 880,132 - +0.7 880,139 - -1.5 880,140 + +0.9
Or see this region's nucleotide sequence