Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04585 and MMP_RS04590 are separated by 27 nucleotides MMP_RS04590 and MMP_RS04595 are separated by 30 nucleotides MMP_RS04595 and MMP_RS04600 are separated by 109 nucleotides
MMP_RS04585: MMP_RS04585 - AIR synthase related protein, at 875,462 to 876,343
_RS04585
MMP_RS04590: MMP_RS04590 - hypothetical protein, at 876,371 to 877,336
_RS04590
MMP_RS04595: MMP_RS04595 - hypothetical protein, at 877,367 to 877,864
_RS04595
MMP_RS04600: MMP_RS04600 - tetratricopeptide repeat protein, at 877,974 to 879,140
_RS04600
Position (kb) 876
877
878 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 875.382 kb on - strand at 875.383 kb on + strand at 875.388 kb on - strand at 875.388 kb on - strand at 875.389 kb on + strand at 875.391 kb on + strand at 875.391 kb on + strand at 875.394 kb on - strand at 875.395 kb on + strand at 875.411 kb on + strand at 875.425 kb on - strand at 875.426 kb on + strand at 875.426 kb on + strand at 875.428 kb on + strand at 875.444 kb on + strand at 875.489 kb on - strand at 875.490 kb on + strand at 875.503 kb on - strand at 875.503 kb on - strand at 875.516 kb on + strand at 875.598 kb on - strand, within MMP_RS04585 at 875.621 kb on + strand, within MMP_RS04585 at 875.668 kb on - strand, within MMP_RS04585 at 875.678 kb on + strand, within MMP_RS04585 at 875.678 kb on + strand, within MMP_RS04585 at 875.766 kb on - strand, within MMP_RS04585 at 875.767 kb on + strand, within MMP_RS04585 at 875.767 kb on + strand, within MMP_RS04585 at 875.797 kb on - strand, within MMP_RS04585 at 875.797 kb on - strand, within MMP_RS04585 at 875.798 kb on + strand, within MMP_RS04585 at 875.809 kb on + strand, within MMP_RS04585 at 875.811 kb on - strand, within MMP_RS04585 at 875.892 kb on - strand, within MMP_RS04585 at 875.893 kb on + strand, within MMP_RS04585 at 875.925 kb on - strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.949 kb on - strand, within MMP_RS04585 at 875.959 kb on - strand, within MMP_RS04585 at 876.007 kb on + strand, within MMP_RS04585 at 876.007 kb on + strand, within MMP_RS04585 at 876.166 kb on + strand, within MMP_RS04585 at 876.166 kb on + strand, within MMP_RS04585 at 876.196 kb on - strand, within MMP_RS04585 at 876.196 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.250 kb on + strand, within MMP_RS04585 at 876.267 kb on - strand at 876.289 kb on - strand at 876.289 kb on - strand at 876.295 kb on - strand at 876.315 kb on - strand at 876.316 kb on + strand at 876.316 kb on + strand at 876.335 kb on + strand at 876.366 kb on + strand at 876.407 kb on + strand at 876.501 kb on - strand, within MMP_RS04590 at 876.501 kb on - strand, within MMP_RS04590 at 876.502 kb on + strand, within MMP_RS04590 at 876.506 kb on - strand, within MMP_RS04590 at 876.507 kb on + strand, within MMP_RS04590 at 876.507 kb on + strand, within MMP_RS04590 at 876.516 kb on - strand, within MMP_RS04590 at 876.527 kb on - strand, within MMP_RS04590 at 876.528 kb on + strand, within MMP_RS04590 at 876.542 kb on + strand, within MMP_RS04590 at 876.546 kb on + strand, within MMP_RS04590 at 876.560 kb on - strand, within MMP_RS04590 at 876.560 kb on - strand, within MMP_RS04590 at 876.607 kb on - strand, within MMP_RS04590 at 876.608 kb on + strand, within MMP_RS04590 at 876.632 kb on + strand, within MMP_RS04590 at 876.659 kb on - strand, within MMP_RS04590 at 876.687 kb on + strand, within MMP_RS04590 at 876.691 kb on - strand, within MMP_RS04590 at 876.955 kb on + strand, within MMP_RS04590 at 876.998 kb on - strand, within MMP_RS04590 at 877.043 kb on - strand, within MMP_RS04590 at 877.120 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.138 kb on - strand, within MMP_RS04590 at 877.170 kb on - strand, within MMP_RS04590 at 877.174 kb on - strand, within MMP_RS04590 at 877.209 kb on + strand, within MMP_RS04590 at 877.233 kb on + strand, within MMP_RS04590 at 877.272 kb on + strand at 877.363 kb on - strand at 877.482 kb on + strand, within MMP_RS04595 at 877.539 kb on - strand, within MMP_RS04595 at 877.550 kb on - strand, within MMP_RS04595 at 877.560 kb on + strand, within MMP_RS04595 at 877.571 kb on - strand, within MMP_RS04595 at 877.743 kb on + strand, within MMP_RS04595 at 877.766 kb on + strand, within MMP_RS04595 at 877.846 kb on + strand at 877.846 kb on + strand at 877.895 kb on - strand at 877.910 kb on - strand at 877.915 kb on - strand at 877.957 kb on - strand at 877.960 kb on - strand at 877.994 kb on - strand at 877.995 kb on + strand at 877.995 kb on + strand at 877.997 kb on - strand at 878.013 kb on - strand at 878.013 kb on - strand at 878.013 kb on - strand at 878.027 kb on + strand at 878.066 kb on + strand at 878.067 kb on - strand at 878.118 kb on + strand, within MMP_RS04600 at 878.118 kb on + strand, within MMP_RS04600 at 878.137 kb on + strand, within MMP_RS04600 at 878.137 kb on + strand, within MMP_RS04600 at 878.169 kb on - strand, within MMP_RS04600 at 878.169 kb on - strand, within MMP_RS04600 at 878.171 kb on - strand, within MMP_RS04600 at 878.171 kb on - strand, within MMP_RS04600 at 878.172 kb on + strand, within MMP_RS04600 at 878.173 kb on - strand, within MMP_RS04600 at 878.182 kb on - strand, within MMP_RS04600
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 875,382 - -4.3 875,383 + +0.7 875,388 - -0.8 875,388 - -2.4 875,389 + +1.5 875,391 + +0.8 875,391 + +0.9 875,394 - -2.2 875,395 + +1.1 875,411 + -1.6 875,425 - -1.9 875,426 + +0.8 875,426 + +1.3 875,428 + -1.0 875,444 + -0.3 875,489 - -5.5 875,490 + -2.9 875,503 - -3.4 875,503 - -3.2 875,516 + -4.3 875,598 - MMP_RS04585 0.15 -4.6 875,621 + MMP_RS04585 0.18 -1.9 875,668 - MMP_RS04585 0.23 -1.9 875,678 + MMP_RS04585 0.24 -5.6 875,678 + MMP_RS04585 0.24 -1.1 875,766 - MMP_RS04585 0.34 -2.9 875,767 + MMP_RS04585 0.35 -1.0 875,767 + MMP_RS04585 0.35 -4.1 875,797 - MMP_RS04585 0.38 -3.8 875,797 - MMP_RS04585 0.38 -4.9 875,798 + MMP_RS04585 0.38 -4.0 875,809 + MMP_RS04585 0.39 -1.5 875,811 - MMP_RS04585 0.40 -4.5 875,892 - MMP_RS04585 0.49 -3.2 875,893 + MMP_RS04585 0.49 -2.9 875,925 - MMP_RS04585 0.52 -4.1 875,926 + MMP_RS04585 0.53 -3.2 875,926 + MMP_RS04585 0.53 -4.3 875,926 + MMP_RS04585 0.53 -1.5 875,926 + MMP_RS04585 0.53 -1.9 875,949 - MMP_RS04585 0.55 -4.1 875,959 - MMP_RS04585 0.56 -2.8 876,007 + MMP_RS04585 0.62 -4.2 876,007 + MMP_RS04585 0.62 -1.2 876,166 + MMP_RS04585 0.80 -5.7 876,166 + MMP_RS04585 0.80 -3.4 876,196 - MMP_RS04585 0.83 -4.5 876,196 - MMP_RS04585 0.83 -1.1 876,220 - MMP_RS04585 0.86 -4.0 876,220 - MMP_RS04585 0.86 -6.2 876,220 - MMP_RS04585 0.86 -2.9 876,221 + MMP_RS04585 0.86 -2.7 876,221 + MMP_RS04585 0.86 -1.7 876,221 + MMP_RS04585 0.86 -5.1 876,221 + MMP_RS04585 0.86 -3.6 876,221 + MMP_RS04585 0.86 -5.7 876,250 + MMP_RS04585 0.89 -1.5 876,267 - -4.9 876,289 - -3.8 876,289 - -4.7 876,295 - -3.1 876,315 - +1.0 876,316 + -1.1 876,316 + -0.2 876,335 + -0.5 876,366 + -1.3 876,407 + +1.2 876,501 - MMP_RS04590 0.13 -0.0 876,501 - MMP_RS04590 0.13 +1.1 876,502 + MMP_RS04590 0.14 +0.8 876,506 - MMP_RS04590 0.14 +1.7 876,507 + MMP_RS04590 0.14 -0.3 876,507 + MMP_RS04590 0.14 +1.0 876,516 - MMP_RS04590 0.15 +1.6 876,527 - MMP_RS04590 0.16 +1.4 876,528 + MMP_RS04590 0.16 -2.3 876,542 + MMP_RS04590 0.18 +1.0 876,546 + MMP_RS04590 0.18 +1.0 876,560 - MMP_RS04590 0.20 -0.4 876,560 - MMP_RS04590 0.20 -1.9 876,607 - MMP_RS04590 0.24 -0.6 876,608 + MMP_RS04590 0.25 +0.8 876,632 + MMP_RS04590 0.27 -0.8 876,659 - MMP_RS04590 0.30 +1.8 876,687 + MMP_RS04590 0.33 +2.8 876,691 - MMP_RS04590 0.33 +1.1 876,955 + MMP_RS04590 0.60 +0.9 876,998 - MMP_RS04590 0.65 -0.7 877,043 - MMP_RS04590 0.70 +3.7 877,120 + MMP_RS04590 0.78 -0.6 877,133 + MMP_RS04590 0.79 +1.6 877,133 + MMP_RS04590 0.79 +0.8 877,133 + MMP_RS04590 0.79 +1.9 877,138 - MMP_RS04590 0.79 -1.5 877,170 - MMP_RS04590 0.83 +0.4 877,174 - MMP_RS04590 0.83 -1.5 877,209 + MMP_RS04590 0.87 +0.4 877,233 + MMP_RS04590 0.89 +0.0 877,272 + +0.6 877,363 - +0.1 877,482 + MMP_RS04595 0.23 +1.2 877,539 - MMP_RS04595 0.35 -0.8 877,550 - MMP_RS04595 0.37 +1.8 877,560 + MMP_RS04595 0.39 +0.4 877,571 - MMP_RS04595 0.41 +0.9 877,743 + MMP_RS04595 0.76 -0.3 877,766 + MMP_RS04595 0.80 +0.7 877,846 + +0.3 877,846 + +0.5 877,895 - -0.8 877,910 - -0.2 877,915 - -1.8 877,957 - -0.0 877,960 - +0.9 877,994 - -0.5 877,995 + +0.8 877,995 + +0.6 877,997 - +1.2 878,013 - -0.7 878,013 - +0.3 878,013 - +0.7 878,027 + +0.1 878,066 + +0.1 878,067 - +0.5 878,118 + MMP_RS04600 0.12 -1.6 878,118 + MMP_RS04600 0.12 +1.1 878,137 + MMP_RS04600 0.14 -3.8 878,137 + MMP_RS04600 0.14 -0.1 878,169 - MMP_RS04600 0.17 -1.5 878,169 - MMP_RS04600 0.17 +1.2 878,171 - MMP_RS04600 0.17 -0.2 878,171 - MMP_RS04600 0.17 -1.4 878,172 + MMP_RS04600 0.17 -1.5 878,173 - MMP_RS04600 0.17 +0.6 878,182 - MMP_RS04600 0.18 +0.1
Or see this region's nucleotide sequence