Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04540 and MMP_RS04545 are separated by 13 nucleotides MMP_RS04545 and MMP_RS04550 are separated by 452 nucleotides
MMP_RS04540: MMP_RS04540 - tetratricopeptide repeat protein, at 864,944 to 866,647
_RS04540
MMP_RS04545: MMP_RS04545 - methyltransferase domain-containing protein, at 866,661 to 867,458
_RS04545
MMP_RS04550: MMP_RS04550 - S-layer protein, at 867,911 to 869,512
_RS04550
Position (kb) 866
867
868 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 865.719 kb on - strand, within MMP_RS04540 at 865.720 kb on + strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.814 kb on - strand, within MMP_RS04540 at 865.815 kb on + strand, within MMP_RS04540 at 865.833 kb on - strand, within MMP_RS04540 at 865.834 kb on + strand, within MMP_RS04540 at 865.992 kb on - strand, within MMP_RS04540 at 866.014 kb on + strand, within MMP_RS04540 at 866.021 kb on + strand, within MMP_RS04540 at 866.061 kb on - strand, within MMP_RS04540 at 866.061 kb on - strand, within MMP_RS04540 at 866.065 kb on + strand, within MMP_RS04540 at 866.155 kb on - strand, within MMP_RS04540 at 866.378 kb on - strand, within MMP_RS04540 at 866.384 kb on + strand, within MMP_RS04540 at 866.417 kb on - strand, within MMP_RS04540 at 866.417 kb on - strand, within MMP_RS04540 at 866.438 kb on - strand, within MMP_RS04540 at 866.482 kb on + strand at 866.482 kb on + strand at 866.483 kb on - strand at 866.483 kb on - strand at 866.484 kb on + strand at 866.501 kb on - strand at 866.501 kb on - strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.512 kb on + strand at 866.519 kb on - strand at 866.520 kb on + strand at 866.559 kb on - strand at 866.559 kb on - strand at 866.609 kb on + strand at 866.609 kb on + strand at 866.609 kb on + strand at 866.653 kb on - strand at 866.658 kb on + strand at 866.662 kb on - strand at 866.738 kb on - strand at 866.742 kb on - strand, within MMP_RS04545 at 866.757 kb on - strand, within MMP_RS04545 at 866.758 kb on + strand, within MMP_RS04545 at 866.787 kb on + strand, within MMP_RS04545 at 866.791 kb on + strand, within MMP_RS04545 at 866.796 kb on - strand, within MMP_RS04545 at 866.884 kb on + strand, within MMP_RS04545 at 866.888 kb on - strand, within MMP_RS04545 at 866.889 kb on + strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.901 kb on - strand, within MMP_RS04545 at 866.901 kb on - strand, within MMP_RS04545 at 866.902 kb on + strand, within MMP_RS04545 at 866.914 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.919 kb on - strand, within MMP_RS04545 at 866.919 kb on - strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.925 kb on + strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.939 kb on + strand, within MMP_RS04545 at 866.939 kb on + strand, within MMP_RS04545 at 866.997 kb on + strand, within MMP_RS04545 at 866.997 kb on + strand, within MMP_RS04545 at 866.999 kb on - strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.036 kb on - strand, within MMP_RS04545 at 867.042 kb on + strand, within MMP_RS04545 at 867.061 kb on - strand, within MMP_RS04545 at 867.062 kb on + strand, within MMP_RS04545 at 867.062 kb on + strand, within MMP_RS04545 at 867.100 kb on + strand, within MMP_RS04545 at 867.100 kb on + strand, within MMP_RS04545 at 867.124 kb on + strand, within MMP_RS04545 at 867.137 kb on - strand, within MMP_RS04545 at 867.140 kb on - strand, within MMP_RS04545 at 867.141 kb on + strand, within MMP_RS04545 at 867.150 kb on - strand, within MMP_RS04545 at 867.150 kb on - strand, within MMP_RS04545 at 867.156 kb on + strand, within MMP_RS04545 at 867.180 kb on - strand, within MMP_RS04545 at 867.181 kb on + strand, within MMP_RS04545 at 867.181 kb on + strand, within MMP_RS04545 at 867.182 kb on - strand, within MMP_RS04545 at 867.182 kb on - strand, within MMP_RS04545 at 867.183 kb on + strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.261 kb on + strand, within MMP_RS04545 at 867.269 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.364 kb on - strand, within MMP_RS04545 at 867.365 kb on + strand, within MMP_RS04545 at 867.555 kb on + strand at 867.555 kb on + strand at 867.568 kb on - strand at 867.684 kb on - strand at 867.733 kb on - strand at 867.733 kb on - strand at 867.733 kb on - strand at 867.734 kb on + strand at 867.734 kb on + strand at 867.737 kb on - strand at 867.738 kb on + strand at 867.738 kb on + strand at 867.743 kb on - strand at 867.743 kb on - strand at 867.744 kb on + strand at 867.744 kb on + strand at 867.747 kb on - strand at 867.748 kb on + strand at 867.879 kb on + strand at 867.897 kb on + strand at 867.897 kb on + strand at 867.909 kb on + strand at 867.919 kb on - strand at 867.923 kb on + strand at 868.014 kb on - strand at 868.014 kb on - strand at 868.057 kb on - strand at 868.057 kb on - strand at 868.067 kb on + strand at 868.146 kb on - strand, within MMP_RS04550 at 868.198 kb on - strand, within MMP_RS04550 at 868.218 kb on - strand, within MMP_RS04550 at 868.272 kb on + strand, within MMP_RS04550 at 868.272 kb on + strand, within MMP_RS04550 at 868.276 kb on + strand, within MMP_RS04550 at 868.276 kb on + strand, within MMP_RS04550 at 868.279 kb on - strand, within MMP_RS04550 at 868.280 kb on + strand, within MMP_RS04550 at 868.280 kb on + strand, within MMP_RS04550 at 868.303 kb on - strand, within MMP_RS04550
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 865,719 - MMP_RS04540 0.45 +1.1 865,720 + MMP_RS04540 0.46 -0.1 865,726 - MMP_RS04540 0.46 +1.0 865,726 - MMP_RS04540 0.46 -1.5 865,814 - MMP_RS04540 0.51 -0.4 865,815 + MMP_RS04540 0.51 -2.8 865,833 - MMP_RS04540 0.52 -0.2 865,834 + MMP_RS04540 0.52 +1.3 865,992 - MMP_RS04540 0.62 +0.4 866,014 + MMP_RS04540 0.63 +0.1 866,021 + MMP_RS04540 0.63 -0.6 866,061 - MMP_RS04540 0.66 -4.8 866,061 - MMP_RS04540 0.66 +0.8 866,065 + MMP_RS04540 0.66 -0.0 866,155 - MMP_RS04540 0.71 -0.1 866,378 - MMP_RS04540 0.84 -0.8 866,384 + MMP_RS04540 0.85 +1.0 866,417 - MMP_RS04540 0.86 +1.8 866,417 - MMP_RS04540 0.86 -0.6 866,438 - MMP_RS04540 0.88 +0.3 866,482 + -0.8 866,482 + -1.8 866,483 - -1.0 866,483 - +0.2 866,484 + -1.5 866,501 - +0.0 866,501 - +0.1 866,502 + +1.8 866,502 + +1.7 866,502 + -0.1 866,502 + +0.7 866,502 + -0.2 866,502 + +1.7 866,512 + -0.1 866,519 - -3.5 866,520 + +0.4 866,559 - -3.3 866,559 - +0.4 866,609 + +1.6 866,609 + +0.8 866,609 + +0.9 866,653 - -0.0 866,658 + -1.0 866,662 - +0.1 866,738 - -1.1 866,742 - MMP_RS04545 0.10 +0.2 866,757 - MMP_RS04545 0.12 -0.3 866,758 + MMP_RS04545 0.12 +1.7 866,787 + MMP_RS04545 0.16 -2.3 866,791 + MMP_RS04545 0.16 -0.9 866,796 - MMP_RS04545 0.17 -1.3 866,884 + MMP_RS04545 0.28 +0.0 866,888 - MMP_RS04545 0.28 -0.2 866,889 + MMP_RS04545 0.29 +0.2 866,899 - MMP_RS04545 0.30 -0.5 866,899 - MMP_RS04545 0.30 -1.9 866,899 - MMP_RS04545 0.30 -2.2 866,899 - MMP_RS04545 0.30 -0.4 866,901 - MMP_RS04545 0.30 -0.9 866,901 - MMP_RS04545 0.30 +1.1 866,902 + MMP_RS04545 0.30 -1.3 866,914 - MMP_RS04545 0.32 +0.7 866,916 - MMP_RS04545 0.32 -0.4 866,916 - MMP_RS04545 0.32 +0.0 866,916 - MMP_RS04545 0.32 -2.6 866,916 - MMP_RS04545 0.32 +1.1 866,917 + MMP_RS04545 0.32 +0.5 866,917 + MMP_RS04545 0.32 +1.2 866,917 + MMP_RS04545 0.32 -1.1 866,917 + MMP_RS04545 0.32 -0.9 866,919 - MMP_RS04545 0.32 +0.4 866,919 - MMP_RS04545 0.32 +0.7 866,920 + MMP_RS04545 0.32 +0.7 866,920 + MMP_RS04545 0.32 -0.1 866,920 + MMP_RS04545 0.32 -1.0 866,920 + MMP_RS04545 0.32 -2.7 866,920 + MMP_RS04545 0.32 +0.1 866,920 + MMP_RS04545 0.32 +0.1 866,920 + MMP_RS04545 0.32 +0.0 866,925 + MMP_RS04545 0.33 -0.3 866,926 - MMP_RS04545 0.33 +0.1 866,926 - MMP_RS04545 0.33 -1.4 866,926 - MMP_RS04545 0.33 -0.0 866,938 - MMP_RS04545 0.35 +0.6 866,938 - MMP_RS04545 0.35 -3.1 866,938 - MMP_RS04545 0.35 +1.4 866,939 + MMP_RS04545 0.35 -0.7 866,939 + MMP_RS04545 0.35 -1.9 866,997 + MMP_RS04545 0.42 +0.8 866,997 + MMP_RS04545 0.42 +1.9 866,999 - MMP_RS04545 0.42 -0.6 867,000 + MMP_RS04545 0.42 -1.0 867,000 + MMP_RS04545 0.42 -0.0 867,000 + MMP_RS04545 0.42 -0.5 867,001 - MMP_RS04545 0.43 -0.3 867,001 - MMP_RS04545 0.43 +0.7 867,001 - MMP_RS04545 0.43 +0.3 867,001 - MMP_RS04545 0.43 +0.1 867,001 - MMP_RS04545 0.43 -3.1 867,002 + MMP_RS04545 0.43 -0.0 867,002 + MMP_RS04545 0.43 +0.4 867,002 + MMP_RS04545 0.43 +1.1 867,002 + MMP_RS04545 0.43 +0.3 867,002 + MMP_RS04545 0.43 -0.8 867,002 + MMP_RS04545 0.43 -0.3 867,002 + MMP_RS04545 0.43 +0.2 867,003 - MMP_RS04545 0.43 +1.0 867,003 - MMP_RS04545 0.43 +0.3 867,003 - MMP_RS04545 0.43 +0.4 867,004 + MMP_RS04545 0.43 -0.5 867,004 + MMP_RS04545 0.43 -0.7 867,004 + MMP_RS04545 0.43 -1.5 867,004 + MMP_RS04545 0.43 -0.3 867,036 - MMP_RS04545 0.47 -4.1 867,042 + MMP_RS04545 0.48 -0.8 867,061 - MMP_RS04545 0.50 +1.0 867,062 + MMP_RS04545 0.50 -0.7 867,062 + MMP_RS04545 0.50 -0.5 867,100 + MMP_RS04545 0.55 -0.8 867,100 + MMP_RS04545 0.55 -0.9 867,124 + MMP_RS04545 0.58 -0.8 867,137 - MMP_RS04545 0.60 +1.0 867,140 - MMP_RS04545 0.60 -2.2 867,141 + MMP_RS04545 0.60 +0.1 867,150 - MMP_RS04545 0.61 -1.4 867,150 - MMP_RS04545 0.61 +1.6 867,156 + MMP_RS04545 0.62 +0.8 867,180 - MMP_RS04545 0.65 +0.6 867,181 + MMP_RS04545 0.65 +0.7 867,181 + MMP_RS04545 0.65 +2.9 867,182 - MMP_RS04545 0.65 +0.3 867,182 - MMP_RS04545 0.65 -1.0 867,183 + MMP_RS04545 0.65 -2.6 867,186 - MMP_RS04545 0.66 -0.9 867,186 - MMP_RS04545 0.66 +0.3 867,186 - MMP_RS04545 0.66 +0.8 867,186 - MMP_RS04545 0.66 +0.7 867,187 + MMP_RS04545 0.66 +1.5 867,187 + MMP_RS04545 0.66 +1.0 867,187 + MMP_RS04545 0.66 -0.0 867,187 + MMP_RS04545 0.66 +1.8 867,261 + MMP_RS04545 0.75 -2.0 867,269 - MMP_RS04545 0.76 +1.0 867,326 - MMP_RS04545 0.83 +0.1 867,326 - MMP_RS04545 0.83 +0.2 867,326 - MMP_RS04545 0.83 -3.0 867,326 - MMP_RS04545 0.83 -2.3 867,364 - MMP_RS04545 0.88 +0.5 867,365 + MMP_RS04545 0.88 +0.9 867,555 + -0.5 867,555 + +0.3 867,568 - +1.4 867,684 - -0.0 867,733 - +0.6 867,733 - -1.5 867,733 - +0.1 867,734 + +1.0 867,734 + +1.7 867,737 - +0.3 867,738 + -2.0 867,738 + +1.7 867,743 - +0.3 867,743 - -0.5 867,744 + -0.3 867,744 + +0.1 867,747 - +0.5 867,748 + +0.8 867,879 + +0.7 867,897 + -0.4 867,897 + +1.0 867,909 + +2.2 867,919 - -0.1 867,923 + +0.8 868,014 - -0.9 868,014 - +0.7 868,057 - +0.1 868,057 - +0.2 868,067 + -0.5 868,146 - MMP_RS04550 0.15 +0.9 868,198 - MMP_RS04550 0.18 -1.1 868,218 - MMP_RS04550 0.19 +1.2 868,272 + MMP_RS04550 0.23 +0.3 868,272 + MMP_RS04550 0.23 -1.3 868,276 + MMP_RS04550 0.23 +0.3 868,276 + MMP_RS04550 0.23 -0.4 868,279 - MMP_RS04550 0.23 -0.3 868,280 + MMP_RS04550 0.23 -0.3 868,280 + MMP_RS04550 0.23 +0.2 868,303 - MMP_RS04550 0.24 +0.2
Or see this region's nucleotide sequence