Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04350 and MMP_RS04355 are separated by 14 nucleotides MMP_RS04355 and MMP_RS04360 are separated by 130 nucleotides MMP_RS04360 and MMP_RS04365 are separated by 28 nucleotides
MMP_RS04350: MMP_RS04350 - 2-hydroxyacyl-CoA dehydratase family protein, at 831,247 to 832,368
_RS04350
MMP_RS04355: MMP_RS04355 - ribonuclease H family protein, at 832,383 to 832,988
_RS04355
MMP_RS04360: MMP_RS04360 - hypothetical protein, at 833,119 to 833,310
_RS04360
MMP_RS04365: MMP_RS04365 - M48 family metallopeptidase, at 833,339 to 834,007
_RS04365
Position (kb) 832
833 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 831.463 kb on + strand, within MMP_RS04350 at 831.463 kb on + strand, within MMP_RS04350 at 831.477 kb on - strand, within MMP_RS04350 at 831.607 kb on - strand, within MMP_RS04350 at 831.686 kb on + strand, within MMP_RS04350 at 831.789 kb on + strand, within MMP_RS04350 at 831.871 kb on + strand, within MMP_RS04350 at 831.893 kb on - strand, within MMP_RS04350 at 831.894 kb on + strand, within MMP_RS04350 at 831.894 kb on + strand, within MMP_RS04350 at 831.934 kb on - strand, within MMP_RS04350 at 832.045 kb on + strand, within MMP_RS04350 at 832.071 kb on + strand, within MMP_RS04350 at 832.175 kb on - strand, within MMP_RS04350 at 832.204 kb on - strand, within MMP_RS04350 at 832.208 kb on + strand, within MMP_RS04350 at 832.214 kb on - strand, within MMP_RS04350 at 832.214 kb on - strand, within MMP_RS04350 at 832.220 kb on + strand, within MMP_RS04350 at 832.234 kb on + strand, within MMP_RS04350 at 832.290 kb on - strand at 832.291 kb on + strand at 832.367 kb on + strand at 832.386 kb on - strand at 832.424 kb on - strand at 832.466 kb on - strand, within MMP_RS04355 at 832.483 kb on - strand, within MMP_RS04355 at 832.484 kb on + strand, within MMP_RS04355 at 832.489 kb on + strand, within MMP_RS04355 at 832.489 kb on + strand, within MMP_RS04355 at 832.501 kb on + strand, within MMP_RS04355 at 832.501 kb on + strand, within MMP_RS04355 at 832.503 kb on + strand, within MMP_RS04355 at 832.504 kb on - strand, within MMP_RS04355 at 832.504 kb on - strand, within MMP_RS04355 at 832.504 kb on - strand, within MMP_RS04355 at 832.505 kb on + strand, within MMP_RS04355 at 832.505 kb on + strand, within MMP_RS04355 at 832.509 kb on - strand, within MMP_RS04355 at 832.510 kb on + strand, within MMP_RS04355 at 832.510 kb on + strand, within MMP_RS04355 at 832.511 kb on - strand, within MMP_RS04355 at 832.544 kb on - strand, within MMP_RS04355 at 832.567 kb on - strand, within MMP_RS04355 at 832.567 kb on - strand, within MMP_RS04355 at 832.568 kb on + strand, within MMP_RS04355 at 832.568 kb on + strand, within MMP_RS04355 at 832.576 kb on - strand, within MMP_RS04355 at 832.576 kb on - strand, within MMP_RS04355 at 832.576 kb on - strand, within MMP_RS04355 at 832.576 kb on - strand, within MMP_RS04355 at 832.577 kb on + strand, within MMP_RS04355 at 832.578 kb on - strand, within MMP_RS04355 at 832.578 kb on - strand, within MMP_RS04355 at 832.578 kb on - strand, within MMP_RS04355 at 832.578 kb on - strand, within MMP_RS04355 at 832.695 kb on + strand, within MMP_RS04355 at 832.788 kb on - strand, within MMP_RS04355 at 832.788 kb on - strand, within MMP_RS04355 at 832.938 kb on + strand at 832.940 kb on - strand at 832.945 kb on + strand at 832.945 kb on + strand at 832.975 kb on - strand at 832.975 kb on - strand at 832.977 kb on - strand at 832.977 kb on - strand at 832.978 kb on + strand at 832.983 kb on + strand at 833.004 kb on - strand at 833.018 kb on - strand at 833.018 kb on - strand at 833.018 kb on - strand at 833.018 kb on - strand at 833.019 kb on + strand at 833.020 kb on - strand at 833.021 kb on + strand at 833.023 kb on + strand at 833.023 kb on + strand at 833.023 kb on + strand at 833.027 kb on + strand at 833.055 kb on + strand at 833.103 kb on + strand at 833.178 kb on + strand, within MMP_RS04360 at 833.216 kb on - strand, within MMP_RS04360 at 833.216 kb on - strand, within MMP_RS04360 at 833.308 kb on - strand at 833.415 kb on - strand, within MMP_RS04365 at 833.416 kb on + strand, within MMP_RS04365 at 833.447 kb on - strand, within MMP_RS04365 at 833.447 kb on - strand, within MMP_RS04365 at 833.447 kb on - strand, within MMP_RS04365 at 833.448 kb on + strand, within MMP_RS04365 at 833.461 kb on - strand, within MMP_RS04365 at 833.540 kb on - strand, within MMP_RS04365 at 833.542 kb on - strand, within MMP_RS04365 at 833.557 kb on + strand, within MMP_RS04365 at 833.565 kb on + strand, within MMP_RS04365 at 833.568 kb on - strand, within MMP_RS04365 at 833.579 kb on - strand, within MMP_RS04365 at 833.582 kb on + strand, within MMP_RS04365 at 833.592 kb on - strand, within MMP_RS04365 at 833.592 kb on - strand, within MMP_RS04365 at 833.593 kb on + strand, within MMP_RS04365 at 833.616 kb on - strand, within MMP_RS04365 at 833.616 kb on - strand, within MMP_RS04365 at 833.617 kb on + strand, within MMP_RS04365 at 833.645 kb on - strand, within MMP_RS04365 at 833.646 kb on + strand, within MMP_RS04365 at 833.646 kb on + strand, within MMP_RS04365 at 833.737 kb on - strand, within MMP_RS04365 at 833.842 kb on + strand, within MMP_RS04365 at 833.875 kb on - strand, within MMP_RS04365 at 833.886 kb on - strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.910 kb on - strand, within MMP_RS04365
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 831,463 + MMP_RS04350 0.19 -0.1 831,463 + MMP_RS04350 0.19 -1.3 831,477 - MMP_RS04350 0.20 -0.4 831,607 - MMP_RS04350 0.32 -2.6 831,686 + MMP_RS04350 0.39 +0.2 831,789 + MMP_RS04350 0.48 +0.4 831,871 + MMP_RS04350 0.56 -2.5 831,893 - MMP_RS04350 0.58 +1.1 831,894 + MMP_RS04350 0.58 -3.1 831,894 + MMP_RS04350 0.58 +1.9 831,934 - MMP_RS04350 0.61 +0.8 832,045 + MMP_RS04350 0.71 +0.1 832,071 + MMP_RS04350 0.73 -0.0 832,175 - MMP_RS04350 0.83 +0.2 832,204 - MMP_RS04350 0.85 -0.3 832,208 + MMP_RS04350 0.86 +0.8 832,214 - MMP_RS04350 0.86 -0.5 832,214 - MMP_RS04350 0.86 -0.1 832,220 + MMP_RS04350 0.87 +0.1 832,234 + MMP_RS04350 0.88 +1.8 832,290 - -0.8 832,291 + -5.0 832,367 + -0.8 832,386 - -0.1 832,424 - +0.4 832,466 - MMP_RS04355 0.14 +0.6 832,483 - MMP_RS04355 0.17 +0.7 832,484 + MMP_RS04355 0.17 +1.1 832,489 + MMP_RS04355 0.17 +2.7 832,489 + MMP_RS04355 0.17 -2.2 832,501 + MMP_RS04355 0.19 -1.0 832,501 + MMP_RS04355 0.19 -2.0 832,503 + MMP_RS04355 0.20 +0.8 832,504 - MMP_RS04355 0.20 +0.6 832,504 - MMP_RS04355 0.20 +0.8 832,504 - MMP_RS04355 0.20 -0.1 832,505 + MMP_RS04355 0.20 +0.4 832,505 + MMP_RS04355 0.20 +0.2 832,509 - MMP_RS04355 0.21 +2.0 832,510 + MMP_RS04355 0.21 -3.9 832,510 + MMP_RS04355 0.21 +0.9 832,511 - MMP_RS04355 0.21 +0.1 832,544 - MMP_RS04355 0.27 +0.4 832,567 - MMP_RS04355 0.30 +0.3 832,567 - MMP_RS04355 0.30 -0.7 832,568 + MMP_RS04355 0.31 +0.2 832,568 + MMP_RS04355 0.31 +0.1 832,576 - MMP_RS04355 0.32 +0.6 832,576 - MMP_RS04355 0.32 -1.6 832,576 - MMP_RS04355 0.32 -0.3 832,576 - MMP_RS04355 0.32 +1.3 832,577 + MMP_RS04355 0.32 -5.0 832,578 - MMP_RS04355 0.32 -0.0 832,578 - MMP_RS04355 0.32 -0.1 832,578 - MMP_RS04355 0.32 -0.0 832,578 - MMP_RS04355 0.32 +1.1 832,695 + MMP_RS04355 0.51 +1.3 832,788 - MMP_RS04355 0.67 -2.5 832,788 - MMP_RS04355 0.67 +0.9 832,938 + -0.9 832,940 - -0.0 832,945 + +0.2 832,945 + +0.3 832,975 - +1.1 832,975 - +1.8 832,977 - -1.4 832,977 - +1.6 832,978 + +1.3 832,983 + -1.4 833,004 - -1.1 833,018 - +0.6 833,018 - -1.6 833,018 - +0.9 833,018 - -1.3 833,019 + +0.3 833,020 - +0.8 833,021 + +0.2 833,023 + -3.8 833,023 + +1.3 833,023 + +0.7 833,027 + -0.8 833,055 + -0.5 833,103 + -0.7 833,178 + MMP_RS04360 0.31 -0.7 833,216 - MMP_RS04360 0.51 +1.3 833,216 - MMP_RS04360 0.51 +0.2 833,308 - +0.1 833,415 - MMP_RS04365 0.11 -1.6 833,416 + MMP_RS04365 0.12 +1.7 833,447 - MMP_RS04365 0.16 -1.6 833,447 - MMP_RS04365 0.16 -2.0 833,447 - MMP_RS04365 0.16 +0.8 833,448 + MMP_RS04365 0.16 -0.5 833,461 - MMP_RS04365 0.18 -0.2 833,540 - MMP_RS04365 0.30 -0.9 833,542 - MMP_RS04365 0.30 +0.6 833,557 + MMP_RS04365 0.33 -0.9 833,565 + MMP_RS04365 0.34 +0.3 833,568 - MMP_RS04365 0.34 -0.8 833,579 - MMP_RS04365 0.36 -1.3 833,582 + MMP_RS04365 0.36 -0.6 833,592 - MMP_RS04365 0.38 -0.1 833,592 - MMP_RS04365 0.38 -1.2 833,593 + MMP_RS04365 0.38 -0.3 833,616 - MMP_RS04365 0.41 +6.4 833,616 - MMP_RS04365 0.41 +0.7 833,617 + MMP_RS04365 0.42 -1.7 833,645 - MMP_RS04365 0.46 +0.1 833,646 + MMP_RS04365 0.46 -0.2 833,646 + MMP_RS04365 0.46 +0.3 833,737 - MMP_RS04365 0.59 -0.1 833,842 + MMP_RS04365 0.75 -1.4 833,875 - MMP_RS04365 0.80 +0.4 833,886 - MMP_RS04365 0.82 -0.0 833,887 + MMP_RS04365 0.82 -0.0 833,887 + MMP_RS04365 0.82 -0.3 833,887 + MMP_RS04365 0.82 -0.4 833,910 - MMP_RS04365 0.85 -3.5
Or see this region's nucleotide sequence