Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04330

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04325 and MMP_RS04330 are separated by 0 nucleotidesMMP_RS04330 and MMP_RS04335 are separated by 51 nucleotidesMMP_RS04335 and MMP_RS04340 are separated by 5 nucleotides MMP_RS04325: MMP_RS04325 - MtaA/CmuA family methyltransferase, at 825,017 to 826,045 _RS04325 MMP_RS04330: MMP_RS04330 - ASKHA domain-containing protein, at 826,046 to 827,824 _RS04330 MMP_RS04335: MMP_RS04335 - GTP-binding protein, at 827,876 to 828,784 _RS04335 MMP_RS04340: MMP_RS04340 - uroporphyrinogen decarboxylase, at 828,790 to 829,653 _RS04340 Position (kb) 826 827 828Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 825.084 kb on - strandat 825.085 kb on + strandat 825.106 kb on - strandat 825.142 kb on + strand, within MMP_RS04325at 825.249 kb on - strand, within MMP_RS04325at 825.249 kb on - strand, within MMP_RS04325at 825.250 kb on + strand, within MMP_RS04325at 825.310 kb on - strand, within MMP_RS04325at 825.589 kb on + strand, within MMP_RS04325at 825.589 kb on + strand, within MMP_RS04325at 825.731 kb on + strand, within MMP_RS04325at 825.731 kb on + strand, within MMP_RS04325at 825.798 kb on - strand, within MMP_RS04325at 825.814 kb on - strand, within MMP_RS04325at 826.066 kb on - strandat 826.075 kb on - strandat 826.076 kb on + strandat 826.078 kb on - strandat 826.235 kb on - strand, within MMP_RS04330at 826.314 kb on - strand, within MMP_RS04330at 826.461 kb on - strand, within MMP_RS04330at 826.558 kb on + strand, within MMP_RS04330at 826.619 kb on + strand, within MMP_RS04330at 826.630 kb on + strand, within MMP_RS04330at 826.630 kb on + strand, within MMP_RS04330at 826.630 kb on + strand, within MMP_RS04330at 826.645 kb on - strand, within MMP_RS04330at 826.683 kb on - strand, within MMP_RS04330at 826.845 kb on + strand, within MMP_RS04330at 826.926 kb on + strand, within MMP_RS04330at 826.971 kb on - strand, within MMP_RS04330at 826.981 kb on - strand, within MMP_RS04330at 826.982 kb on + strand, within MMP_RS04330at 827.030 kb on + strand, within MMP_RS04330at 827.030 kb on + strand, within MMP_RS04330at 827.058 kb on - strand, within MMP_RS04330at 827.058 kb on - strand, within MMP_RS04330at 827.058 kb on - strand, within MMP_RS04330at 827.059 kb on + strand, within MMP_RS04330at 827.124 kb on - strand, within MMP_RS04330at 827.125 kb on + strand, within MMP_RS04330at 827.197 kb on + strand, within MMP_RS04330at 827.229 kb on - strand, within MMP_RS04330at 827.230 kb on + strand, within MMP_RS04330at 827.265 kb on - strand, within MMP_RS04330at 827.357 kb on + strand, within MMP_RS04330at 827.371 kb on + strand, within MMP_RS04330at 827.401 kb on - strand, within MMP_RS04330at 827.409 kb on - strand, within MMP_RS04330at 827.466 kb on - strand, within MMP_RS04330at 827.484 kb on - strand, within MMP_RS04330at 827.484 kb on - strand, within MMP_RS04330at 827.485 kb on + strand, within MMP_RS04330at 827.485 kb on + strand, within MMP_RS04330at 827.494 kb on + strand, within MMP_RS04330at 827.515 kb on + strand, within MMP_RS04330at 827.669 kb on - strandat 827.669 kb on - strandat 827.670 kb on + strandat 827.671 kb on - strandat 827.757 kb on - strandat 827.758 kb on + strandat 827.762 kb on - strandat 827.762 kb on - strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.766 kb on + strandat 827.789 kb on - strandat 827.800 kb on + strandat 827.830 kb on + strandat 827.833 kb on + strandat 827.841 kb on - strandat 827.844 kb on - strandat 827.851 kb on + strandat 827.862 kb on - strandat 827.873 kb on + strandat 827.895 kb on - strandat 827.896 kb on + strandat 827.929 kb on - strandat 827.930 kb on + strandat 827.931 kb on - strandat 828.077 kb on + strand, within MMP_RS04335at 828.174 kb on - strand, within MMP_RS04335at 828.229 kb on - strand, within MMP_RS04335at 828.230 kb on + strand, within MMP_RS04335at 828.240 kb on - strand, within MMP_RS04335at 828.240 kb on - strand, within MMP_RS04335at 828.394 kb on - strand, within MMP_RS04335at 828.408 kb on - strand, within MMP_RS04335at 828.409 kb on + strand, within MMP_RS04335at 828.427 kb on - strand, within MMP_RS04335at 828.486 kb on - strand, within MMP_RS04335at 828.486 kb on - strand, within MMP_RS04335at 828.487 kb on + strand, within MMP_RS04335at 828.487 kb on + strand, within MMP_RS04335at 828.487 kb on + strand, within MMP_RS04335at 828.487 kb on + strand, within MMP_RS04335at 828.489 kb on + strand, within MMP_RS04335at 828.530 kb on + strand, within MMP_RS04335at 828.616 kb on + strand, within MMP_RS04335at 828.665 kb on + strand, within MMP_RS04335at 828.665 kb on + strand, within MMP_RS04335at 828.668 kb on - strand, within MMP_RS04335at 828.760 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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825,084 - -0.7
825,085 + -0.1
825,106 - -0.8
825,142 + MMP_RS04325 0.12 +0.7
825,249 - MMP_RS04325 0.23 +1.6
825,249 - MMP_RS04325 0.23 +1.0
825,250 + MMP_RS04325 0.23 +0.3
825,310 - MMP_RS04325 0.28 -0.0
825,589 + MMP_RS04325 0.56 +1.3
825,589 + MMP_RS04325 0.56 +1.2
825,731 + MMP_RS04325 0.69 +0.8
825,731 + MMP_RS04325 0.69 -0.3
825,798 - MMP_RS04325 0.76 -0.3
825,814 - MMP_RS04325 0.77 +0.2
826,066 - -0.0
826,075 - +0.0
826,076 + +0.4
826,078 - -0.3
826,235 - MMP_RS04330 0.11 -0.7
826,314 - MMP_RS04330 0.15 -2.0
826,461 - MMP_RS04330 0.23 -0.0
826,558 + MMP_RS04330 0.29 -2.2
826,619 + MMP_RS04330 0.32 -0.1
826,630 + MMP_RS04330 0.33 -0.2
826,630 + MMP_RS04330 0.33 +0.6
826,630 + MMP_RS04330 0.33 +0.3
826,645 - MMP_RS04330 0.34 -2.2
826,683 - MMP_RS04330 0.36 -0.6
826,845 + MMP_RS04330 0.45 -2.0
826,926 + MMP_RS04330 0.49 +1.3
826,971 - MMP_RS04330 0.52 +1.1
826,981 - MMP_RS04330 0.53 -2.2
826,982 + MMP_RS04330 0.53 -1.1
827,030 + MMP_RS04330 0.55 +0.1
827,030 + MMP_RS04330 0.55 -0.5
827,058 - MMP_RS04330 0.57 -0.0
827,058 - MMP_RS04330 0.57 -0.4
827,058 - MMP_RS04330 0.57 +1.2
827,059 + MMP_RS04330 0.57 -0.1
827,124 - MMP_RS04330 0.61 +0.1
827,125 + MMP_RS04330 0.61 +1.5
827,197 + MMP_RS04330 0.65 -0.0
827,229 - MMP_RS04330 0.66 +0.2
827,230 + MMP_RS04330 0.67 +0.3
827,265 - MMP_RS04330 0.69 -0.4
827,357 + MMP_RS04330 0.74 +0.3
827,371 + MMP_RS04330 0.74 +1.1
827,401 - MMP_RS04330 0.76 -1.3
827,409 - MMP_RS04330 0.77 +1.3
827,466 - MMP_RS04330 0.80 -3.7
827,484 - MMP_RS04330 0.81 +0.0
827,484 - MMP_RS04330 0.81 +0.4
827,485 + MMP_RS04330 0.81 -1.0
827,485 + MMP_RS04330 0.81 -0.8
827,494 + MMP_RS04330 0.81 -0.3
827,515 + MMP_RS04330 0.83 -4.5
827,669 - +0.1
827,669 - +1.5
827,670 + -0.1
827,671 - +1.0
827,757 - +0.7
827,758 + -0.5
827,762 - -0.3
827,762 - -0.4
827,763 + -1.2
827,763 + +1.1
827,763 + -1.9
827,763 + -0.4
827,763 + -0.4
827,763 + +1.3
827,766 + +0.9
827,789 - -1.0
827,800 + -0.8
827,830 + -0.4
827,833 + +0.4
827,841 - +0.3
827,844 - +0.3
827,851 + -0.4
827,862 - +2.3
827,873 + -0.9
827,895 - -2.1
827,896 + -0.5
827,929 - +0.6
827,930 + +0.2
827,931 - +0.9
828,077 + MMP_RS04335 0.22 +0.7
828,174 - MMP_RS04335 0.33 +0.4
828,229 - MMP_RS04335 0.39 +0.3
828,230 + MMP_RS04335 0.39 -2.7
828,240 - MMP_RS04335 0.40 -0.8
828,240 - MMP_RS04335 0.40 +0.5
828,394 - MMP_RS04335 0.57 +0.4
828,408 - MMP_RS04335 0.59 +1.3
828,409 + MMP_RS04335 0.59 -0.7
828,427 - MMP_RS04335 0.61 +1.5
828,486 - MMP_RS04335 0.67 +0.5
828,486 - MMP_RS04335 0.67 -0.3
828,487 + MMP_RS04335 0.67 +0.6
828,487 + MMP_RS04335 0.67 +0.2
828,487 + MMP_RS04335 0.67 -0.9
828,487 + MMP_RS04335 0.67 -0.3
828,489 + MMP_RS04335 0.67 +0.9
828,530 + MMP_RS04335 0.72 -0.3
828,616 + MMP_RS04335 0.81 +0.3
828,665 + MMP_RS04335 0.87 -0.4
828,665 + MMP_RS04335 0.87 +0.6
828,668 - MMP_RS04335 0.87 +1.1
828,760 + -0.8

Or see this region's nucleotide sequence