Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04285 and MMP_RS04290 are separated by 8 nucleotides MMP_RS04290 and MMP_RS04295 are separated by 90 nucleotides
MMP_RS04285: MMP_RS04285 - Ni/Fe hydrogenase subunit alpha, at 816,716 to 818,131
_RS04285
MMP_RS04290: MMP_RS04290 - 4Fe-4S binding protein, at 818,140 to 819,333
_RS04290
MMP_RS04295: MMP_RS04295 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 819,424 to 821,388
_RS04295
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 817.417 kb on - strand, within MMP_RS04285 at 817.417 kb on - strand, within MMP_RS04285 at 817.422 kb on + strand, within MMP_RS04285 at 817.527 kb on + strand, within MMP_RS04285 at 817.640 kb on - strand, within MMP_RS04285 at 817.644 kb on + strand, within MMP_RS04285 at 817.752 kb on - strand, within MMP_RS04285 at 817.752 kb on - strand, within MMP_RS04285 at 817.782 kb on - strand, within MMP_RS04285 at 817.968 kb on - strand, within MMP_RS04285 at 818.170 kb on + strand at 818.262 kb on + strand, within MMP_RS04290 at 818.301 kb on + strand, within MMP_RS04290 at 818.367 kb on - strand, within MMP_RS04290 at 818.506 kb on + strand, within MMP_RS04290 at 818.631 kb on - strand, within MMP_RS04290 at 818.674 kb on + strand, within MMP_RS04290 at 818.766 kb on - strand, within MMP_RS04290 at 818.850 kb on - strand, within MMP_RS04290 at 818.927 kb on - strand, within MMP_RS04290 at 818.972 kb on - strand, within MMP_RS04290 at 819.115 kb on + strand, within MMP_RS04290 at 819.177 kb on + strand, within MMP_RS04290 at 819.448 kb on - strand at 819.621 kb on + strand, within MMP_RS04295 at 819.657 kb on - strand, within MMP_RS04295 at 819.658 kb on + strand, within MMP_RS04295 at 819.789 kb on + strand, within MMP_RS04295 at 819.987 kb on + strand, within MMP_RS04295 at 820.141 kb on - strand, within MMP_RS04295 at 820.194 kb on - strand, within MMP_RS04295 at 820.195 kb on + strand, within MMP_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 817,417 - MMP_RS04285 0.50 -0.2 817,417 - MMP_RS04285 0.50 +0.0 817,422 + MMP_RS04285 0.50 -1.3 817,527 + MMP_RS04285 0.57 +0.1 817,640 - MMP_RS04285 0.65 -1.0 817,644 + MMP_RS04285 0.66 +0.0 817,752 - MMP_RS04285 0.73 +0.5 817,752 - MMP_RS04285 0.73 +0.1 817,782 - MMP_RS04285 0.75 +0.5 817,968 - MMP_RS04285 0.88 -1.4 818,170 + -1.0 818,262 + MMP_RS04290 0.10 -1.8 818,301 + MMP_RS04290 0.13 -1.3 818,367 - MMP_RS04290 0.19 -0.2 818,506 + MMP_RS04290 0.31 -0.3 818,631 - MMP_RS04290 0.41 -1.3 818,674 + MMP_RS04290 0.45 -2.7 818,766 - MMP_RS04290 0.52 -0.2 818,850 - MMP_RS04290 0.59 +0.9 818,927 - MMP_RS04290 0.66 -2.9 818,972 - MMP_RS04290 0.70 +0.8 819,115 + MMP_RS04290 0.82 -0.1 819,177 + MMP_RS04290 0.87 -0.6 819,448 - +1.2 819,621 + MMP_RS04295 0.10 -2.0 819,657 - MMP_RS04295 0.12 -1.0 819,658 + MMP_RS04295 0.12 +0.5 819,789 + MMP_RS04295 0.19 -0.6 819,987 + MMP_RS04295 0.29 +0.2 820,141 - MMP_RS04295 0.36 -1.1 820,194 - MMP_RS04295 0.39 +0.5 820,195 + MMP_RS04295 0.39 +0.4
Or see this region's nucleotide sequence