Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04185 and MMP_RS04190 are separated by 87 nucleotides MMP_RS04190 and MMP_RS04195 are separated by 217 nucleotides MMP_RS04195 and MMP_RS04200 are separated by 30 nucleotides MMP_RS04200 and MMP_RS04205 are separated by 130 nucleotides
MMP_RS04185: MMP_RS04185 - aldo/keto reductase, at 796,127 to 797,239
_RS04185
MMP_RS04190: MMP_RS04190 - hypothetical protein, at 797,327 to 797,842
_RS04190
MMP_RS04195: MMP_RS04195 - flavodoxin, at 798,060 to 798,596
_RS04195
MMP_RS04200: MMP_RS04200 - DUF111 family protein, at 798,627 to 799,346
_RS04200
MMP_RS04205: MMP_RS04205 - carboxymuconolactone decarboxylase family protein, at 799,477 to 800,229
_RS04205
Position (kb) 798
799 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 797.099 kb on - strand, within MMP_RS04185 at 797.100 kb on + strand, within MMP_RS04185 at 797.172 kb on - strand at 797.273 kb on - strand at 797.305 kb on + strand at 797.361 kb on - strand at 797.362 kb on + strand at 797.362 kb on + strand at 797.362 kb on + strand at 797.365 kb on + strand at 797.403 kb on + strand, within MMP_RS04190 at 797.536 kb on + strand, within MMP_RS04190 at 797.597 kb on + strand, within MMP_RS04190 at 797.709 kb on + strand, within MMP_RS04190 at 797.723 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.810 kb on + strand at 797.810 kb on + strand at 797.818 kb on - strand at 797.821 kb on + strand at 797.821 kb on + strand at 797.859 kb on - strand at 797.959 kb on + strand at 797.959 kb on + strand at 798.002 kb on + strand at 798.090 kb on + strand at 798.090 kb on + strand at 798.179 kb on + strand, within MMP_RS04195 at 798.301 kb on - strand, within MMP_RS04195 at 798.508 kb on - strand, within MMP_RS04195 at 798.511 kb on - strand, within MMP_RS04195 at 798.574 kb on - strand at 798.578 kb on - strand at 798.579 kb on + strand at 798.608 kb on + strand at 798.612 kb on + strand at 798.622 kb on - strand at 798.623 kb on + strand at 798.639 kb on + strand at 798.687 kb on + strand at 798.687 kb on + strand at 798.743 kb on + strand, within MMP_RS04200 at 798.759 kb on + strand, within MMP_RS04200 at 798.782 kb on - strand, within MMP_RS04200 at 798.806 kb on - strand, within MMP_RS04200 at 798.807 kb on + strand, within MMP_RS04200 at 798.837 kb on - strand, within MMP_RS04200 at 798.858 kb on + strand, within MMP_RS04200 at 798.886 kb on - strand, within MMP_RS04200 at 799.090 kb on - strand, within MMP_RS04200 at 799.215 kb on + strand, within MMP_RS04200 at 799.219 kb on - strand, within MMP_RS04200 at 799.273 kb on - strand, within MMP_RS04200 at 799.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 797,099 - MMP_RS04185 0.87 -1.3 797,100 + MMP_RS04185 0.87 +1.0 797,172 - -0.6 797,273 - +1.0 797,305 + -1.5 797,361 - +1.7 797,362 + -0.2 797,362 + -3.0 797,362 + -0.0 797,365 + +0.6 797,403 + MMP_RS04190 0.15 +0.6 797,536 + MMP_RS04190 0.41 +0.5 797,597 + MMP_RS04190 0.52 +0.9 797,709 + MMP_RS04190 0.74 -1.0 797,723 - MMP_RS04190 0.77 +0.3 797,728 - MMP_RS04190 0.78 -0.0 797,728 - MMP_RS04190 0.78 -0.3 797,810 + +1.1 797,810 + -6.1 797,818 - +0.7 797,821 + -0.2 797,821 + -0.1 797,859 - +0.7 797,959 + -0.4 797,959 + +0.2 798,002 + +0.1 798,090 + +1.2 798,090 + -1.3 798,179 + MMP_RS04195 0.22 -2.6 798,301 - MMP_RS04195 0.45 +0.3 798,508 - MMP_RS04195 0.83 -2.3 798,511 - MMP_RS04195 0.84 -2.6 798,574 - -0.2 798,578 - +0.8 798,579 + +0.9 798,608 + -1.2 798,612 + -1.6 798,622 - +0.4 798,623 + -1.2 798,639 + -1.5 798,687 + -0.5 798,687 + +0.6 798,743 + MMP_RS04200 0.16 +1.3 798,759 + MMP_RS04200 0.18 -1.9 798,782 - MMP_RS04200 0.22 -1.6 798,806 - MMP_RS04200 0.25 -0.4 798,807 + MMP_RS04200 0.25 +1.2 798,837 - MMP_RS04200 0.29 +0.4 798,858 + MMP_RS04200 0.32 +0.4 798,886 - MMP_RS04200 0.36 -4.2 799,090 - MMP_RS04200 0.64 +0.6 799,215 + MMP_RS04200 0.82 +0.1 799,219 - MMP_RS04200 0.82 +0.4 799,273 - MMP_RS04200 0.90 -3.3 799,470 - +1.4
Or see this region's nucleotide sequence