Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04120 and MMP_RS04125 are separated by 214 nucleotides MMP_RS04125 and MMP_RS04130 are separated by 102 nucleotides MMP_RS04130 and MMP_RS04135 are separated by 15 nucleotides
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
MMP_RS04125: MMP_RS04125 - TetR/AcrR family transcriptional regulator, at 784,022 to 784,600
_RS04125
MMP_RS04130: MMP_RS04130 - alpha/beta hydrolase, at 784,703 to 785,689
_RS04130
MMP_RS04135: MMP_RS04135 - DUF3737 family protein, at 785,705 to 786,652
_RS04135
Position (kb) 784
785
786 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand at 783.850 kb on - strand at 783.850 kb on - strand at 783.855 kb on - strand at 783.859 kb on + strand at 783.859 kb on + strand at 783.861 kb on - strand at 783.866 kb on - strand at 783.866 kb on - strand at 783.904 kb on - strand at 783.921 kb on - strand at 783.969 kb on - strand at 783.969 kb on - strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.972 kb on + strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.055 kb on + strand at 784.142 kb on + strand, within MMP_RS04125 at 784.504 kb on + strand, within MMP_RS04125 at 784.513 kb on + strand, within MMP_RS04125 at 784.534 kb on - strand, within MMP_RS04125 at 784.547 kb on + strand at 784.573 kb on - strand at 784.576 kb on + strand at 784.576 kb on + strand at 784.610 kb on + strand at 784.649 kb on - strand at 784.650 kb on + strand at 784.653 kb on - strand at 784.658 kb on - strand at 784.671 kb on - strand at 784.765 kb on + strand at 784.823 kb on - strand, within MMP_RS04130 at 784.823 kb on - strand, within MMP_RS04130 at 784.823 kb on - strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.844 kb on + strand, within MMP_RS04130 at 784.873 kb on + strand, within MMP_RS04130 at 784.914 kb on - strand, within MMP_RS04130 at 784.914 kb on - strand, within MMP_RS04130 at 784.970 kb on - strand, within MMP_RS04130 at 785.020 kb on + strand, within MMP_RS04130 at 785.020 kb on + strand, within MMP_RS04130 at 785.073 kb on - strand, within MMP_RS04130 at 785.074 kb on + strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.181 kb on + strand, within MMP_RS04130 at 785.185 kb on - strand, within MMP_RS04130 at 785.185 kb on - strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.187 kb on - strand, within MMP_RS04130 at 785.187 kb on - strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.239 kb on - strand, within MMP_RS04130 at 785.250 kb on - strand, within MMP_RS04130 at 785.301 kb on - strand, within MMP_RS04130 at 785.352 kb on - strand, within MMP_RS04130 at 785.353 kb on + strand, within MMP_RS04130 at 785.385 kb on + strand, within MMP_RS04130 at 785.409 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.475 kb on + strand, within MMP_RS04130 at 785.475 kb on + strand, within MMP_RS04130 at 785.512 kb on + strand, within MMP_RS04130 at 785.537 kb on - strand, within MMP_RS04130 at 785.555 kb on - strand, within MMP_RS04130 at 785.585 kb on - strand, within MMP_RS04130 at 785.585 kb on - strand, within MMP_RS04130 at 785.609 kb on + strand at 785.609 kb on + strand at 785.658 kb on - strand at 785.688 kb on + strand at 785.698 kb on + strand at 785.700 kb on - strand at 785.700 kb on - strand at 785.701 kb on + strand at 785.731 kb on + strand at 785.734 kb on - strand at 785.811 kb on - strand, within MMP_RS04135 at 785.812 kb on + strand, within MMP_RS04135 at 785.814 kb on + strand, within MMP_RS04135 at 785.824 kb on + strand, within MMP_RS04135 at 785.934 kb on - strand, within MMP_RS04135 at 785.936 kb on - strand, within MMP_RS04135 at 786.041 kb on - strand, within MMP_RS04135 at 786.044 kb on + strand, within MMP_RS04135 at 786.064 kb on + strand, within MMP_RS04135 at 786.083 kb on + strand, within MMP_RS04135 at 786.086 kb on + strand, within MMP_RS04135 at 786.094 kb on + strand, within MMP_RS04135 at 786.116 kb on + strand, within MMP_RS04135 at 786.128 kb on + strand, within MMP_RS04135 at 786.128 kb on + strand, within MMP_RS04135 at 786.131 kb on + strand, within MMP_RS04135 at 786.355 kb on - strand, within MMP_RS04135 at 786.355 kb on - strand, within MMP_RS04135 at 786.356 kb on + strand, within MMP_RS04135 at 786.383 kb on - strand, within MMP_RS04135 at 786.532 kb on - strand, within MMP_RS04135 at 786.533 kb on + strand, within MMP_RS04135
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 783,717 - MMP_RS04120 0.85 -0.0 783,759 - +0.2 783,795 - +0.3 783,800 - +1.9 783,801 + -1.1 783,819 + +0.1 783,850 - -0.5 783,850 - +0.5 783,855 - +1.9 783,859 + +0.4 783,859 + +0.5 783,861 - -0.2 783,866 - +0.1 783,866 - +1.0 783,904 - +1.8 783,921 - +0.3 783,969 - +0.6 783,969 - -1.1 783,970 + +0.9 783,970 + +0.3 783,970 + +0.7 783,972 + -0.7 784,017 - -1.0 784,017 - -3.0 784,017 - -1.3 784,018 + -1.8 784,018 + +0.3 784,018 + +1.6 784,019 - +0.4 784,019 - -1.0 784,019 - -2.2 784,020 + +0.5 784,020 + +0.9 784,020 + -0.0 784,020 + +0.5 784,020 + +0.6 784,022 + -1.0 784,022 + +0.8 784,022 + +0.0 784,055 + -1.2 784,142 + MMP_RS04125 0.21 +1.4 784,504 + MMP_RS04125 0.83 +0.4 784,513 + MMP_RS04125 0.85 -3.0 784,534 - MMP_RS04125 0.88 -1.8 784,547 + -1.5 784,573 - -1.1 784,576 + -0.3 784,576 + +0.3 784,610 + -0.8 784,649 - -1.6 784,650 + -1.0 784,653 - +1.0 784,658 - -2.0 784,671 - +1.5 784,765 + -1.5 784,823 - MMP_RS04130 0.12 +1.4 784,823 - MMP_RS04130 0.12 -0.4 784,823 - MMP_RS04130 0.12 +0.5 784,824 + MMP_RS04130 0.12 -0.1 784,824 + MMP_RS04130 0.12 +1.1 784,824 + MMP_RS04130 0.12 +0.3 784,844 + MMP_RS04130 0.14 +0.4 784,873 + MMP_RS04130 0.17 +0.8 784,914 - MMP_RS04130 0.21 -0.1 784,914 - MMP_RS04130 0.21 +1.1 784,970 - MMP_RS04130 0.27 +0.2 785,020 + MMP_RS04130 0.32 +0.3 785,020 + MMP_RS04130 0.32 +0.5 785,073 - MMP_RS04130 0.37 +1.0 785,074 + MMP_RS04130 0.38 -3.3 785,176 - MMP_RS04130 0.48 -0.4 785,176 - MMP_RS04130 0.48 -0.1 785,176 - MMP_RS04130 0.48 -2.0 785,176 - MMP_RS04130 0.48 -0.8 785,176 - MMP_RS04130 0.48 -0.2 785,177 + MMP_RS04130 0.48 +0.0 785,177 + MMP_RS04130 0.48 -2.5 785,177 + MMP_RS04130 0.48 -1.3 785,177 + MMP_RS04130 0.48 +1.6 785,177 + MMP_RS04130 0.48 -1.5 785,181 + MMP_RS04130 0.48 -1.5 785,185 - MMP_RS04130 0.49 +0.4 785,185 - MMP_RS04130 0.49 +1.2 785,186 + MMP_RS04130 0.49 +0.8 785,186 + MMP_RS04130 0.49 -1.6 785,186 + MMP_RS04130 0.49 +1.7 785,187 - MMP_RS04130 0.49 +0.1 785,187 - MMP_RS04130 0.49 +0.4 785,188 + MMP_RS04130 0.49 +1.3 785,188 + MMP_RS04130 0.49 +0.2 785,188 + MMP_RS04130 0.49 -0.6 785,239 - MMP_RS04130 0.54 +0.3 785,250 - MMP_RS04130 0.55 -0.8 785,301 - MMP_RS04130 0.61 +1.7 785,352 - MMP_RS04130 0.66 +0.8 785,353 + MMP_RS04130 0.66 +0.7 785,385 + MMP_RS04130 0.69 +0.7 785,409 - MMP_RS04130 0.72 -1.8 785,474 - MMP_RS04130 0.78 -0.1 785,474 - MMP_RS04130 0.78 +0.5 785,474 - MMP_RS04130 0.78 +0.1 785,475 + MMP_RS04130 0.78 +1.1 785,475 + MMP_RS04130 0.78 +1.0 785,512 + MMP_RS04130 0.82 -0.9 785,537 - MMP_RS04130 0.84 +1.9 785,555 - MMP_RS04130 0.86 +0.3 785,585 - MMP_RS04130 0.89 -3.5 785,585 - MMP_RS04130 0.89 +0.8 785,609 + +0.7 785,609 + -4.7 785,658 - -0.4 785,688 + +0.6 785,698 + -0.3 785,700 - +1.4 785,700 - -1.9 785,701 + -0.0 785,731 + -0.3 785,734 - +0.9 785,811 - MMP_RS04135 0.11 +1.0 785,812 + MMP_RS04135 0.11 -2.7 785,814 + MMP_RS04135 0.11 +0.8 785,824 + MMP_RS04135 0.13 +2.0 785,934 - MMP_RS04135 0.24 -0.9 785,936 - MMP_RS04135 0.24 +0.5 786,041 - MMP_RS04135 0.35 -1.8 786,044 + MMP_RS04135 0.36 +0.3 786,064 + MMP_RS04135 0.38 -1.3 786,083 + MMP_RS04135 0.40 +0.7 786,086 + MMP_RS04135 0.40 +0.9 786,094 + MMP_RS04135 0.41 -0.4 786,116 + MMP_RS04135 0.43 +0.6 786,128 + MMP_RS04135 0.45 -0.4 786,128 + MMP_RS04135 0.45 -0.8 786,131 + MMP_RS04135 0.45 -0.3 786,355 - MMP_RS04135 0.69 +0.4 786,355 - MMP_RS04135 0.69 +0.4 786,356 + MMP_RS04135 0.69 +0.1 786,383 - MMP_RS04135 0.72 -0.4 786,532 - MMP_RS04135 0.87 -0.3 786,533 + MMP_RS04135 0.87 +0.1
Or see this region's nucleotide sequence