Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04070 and MMP_RS04075 are separated by 1 nucleotides MMP_RS04075 and MMP_RS04080 are separated by 405 nucleotides MMP_RS04080 and MMP_RS04085 are separated by 287 nucleotides
MMP_RS04070: MMP_RS04070 - PEGA domain-containing protein, at 770,742 to 772,682
_RS04070
MMP_RS04075: MMP_RS04075 - hypothetical protein, at 772,684 to 773,019
_RS04075
MMP_RS04080: MMP_RS04080 - tRNA-Ser, at 773,425 to 773,511
_RS04080
MMP_RS04085: MMP_RS04085 - hypothetical protein, at 773,799 to 775,298
_RS04085
Position (kb) 773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 772.462 kb on - strand, within MMP_RS04070 at 772.472 kb on - strand, within MMP_RS04070 at 772.539 kb on + strand at 773.208 kb on - strand at 773.251 kb on + strand at 773.386 kb on + strand at 773.630 kb on + strand at 773.633 kb on - strand at 773.633 kb on - strand at 773.635 kb on - strand at 773.636 kb on + strand at 773.636 kb on + strand at 773.716 kb on - strand at 773.717 kb on + strand at 773.717 kb on + strand at 773.744 kb on + strand at 773.759 kb on - strand at 773.759 kb on - strand at 773.762 kb on - strand at 773.769 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.839 kb on + strand at 774.035 kb on - strand, within MMP_RS04085 at 774.096 kb on - strand, within MMP_RS04085 at 774.097 kb on + strand, within MMP_RS04085 at 774.114 kb on - strand, within MMP_RS04085 at 774.114 kb on - strand, within MMP_RS04085 at 774.115 kb on + strand, within MMP_RS04085 at 774.187 kb on - strand, within MMP_RS04085 at 774.224 kb on - strand, within MMP_RS04085 at 774.255 kb on + strand, within MMP_RS04085 at 774.277 kb on - strand, within MMP_RS04085 at 774.277 kb on - strand, within MMP_RS04085 at 774.283 kb on - strand, within MMP_RS04085 at 774.283 kb on - strand, within MMP_RS04085 at 774.284 kb on + strand, within MMP_RS04085 at 774.284 kb on + strand, within MMP_RS04085 at 774.295 kb on - strand, within MMP_RS04085 at 774.296 kb on + strand, within MMP_RS04085 at 774.329 kb on - strand, within MMP_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 772,462 - MMP_RS04070 0.89 +0.9 772,472 - MMP_RS04070 0.89 -1.5 772,539 + +0.8 773,208 - -1.0 773,251 + -1.4 773,386 + -0.6 773,630 + +0.7 773,633 - -0.8 773,633 - -0.8 773,635 - -0.9 773,636 + +0.4 773,636 + -2.4 773,716 - -0.2 773,717 + -0.8 773,717 + +0.2 773,744 + -0.1 773,759 - -2.0 773,759 - -0.9 773,762 - +1.1 773,769 - -0.3 773,778 - +0.8 773,778 - +0.7 773,778 - -3.4 773,839 + +0.1 774,035 - MMP_RS04085 0.16 +0.5 774,096 - MMP_RS04085 0.20 +2.3 774,097 + MMP_RS04085 0.20 -0.0 774,114 - MMP_RS04085 0.21 -0.2 774,114 - MMP_RS04085 0.21 +0.4 774,115 + MMP_RS04085 0.21 +0.9 774,187 - MMP_RS04085 0.26 +1.3 774,224 - MMP_RS04085 0.28 -0.0 774,255 + MMP_RS04085 0.30 +0.7 774,277 - MMP_RS04085 0.32 -0.5 774,277 - MMP_RS04085 0.32 -1.2 774,283 - MMP_RS04085 0.32 +1.0 774,283 - MMP_RS04085 0.32 -2.5 774,284 + MMP_RS04085 0.32 +0.8 774,284 + MMP_RS04085 0.32 -2.7 774,295 - MMP_RS04085 0.33 -0.4 774,296 + MMP_RS04085 0.33 +1.4 774,329 - MMP_RS04085 0.35 +0.8
Or see this region's nucleotide sequence