Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04070 and MMP_RS04075 are separated by 1 nucleotides MMP_RS04075 and MMP_RS04080 are separated by 405 nucleotides MMP_RS04080 and MMP_RS04085 are separated by 287 nucleotides
MMP_RS04070: MMP_RS04070 - PEGA domain-containing protein, at 770,742 to 772,682
_RS04070
MMP_RS04075: MMP_RS04075 - hypothetical protein, at 772,684 to 773,019
_RS04075
MMP_RS04080: MMP_RS04080 - tRNA-Ser, at 773,425 to 773,511
_RS04080
MMP_RS04085: MMP_RS04085 - hypothetical protein, at 773,799 to 775,298
_RS04085
Position (kb) 772
773
774 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 771.725 kb on - strand, within MMP_RS04070 at 771.725 kb on - strand, within MMP_RS04070 at 771.756 kb on - strand, within MMP_RS04070 at 771.798 kb on + strand, within MMP_RS04070 at 771.811 kb on + strand, within MMP_RS04070 at 771.863 kb on - strand, within MMP_RS04070 at 771.863 kb on - strand, within MMP_RS04070 at 771.863 kb on - strand, within MMP_RS04070 at 771.925 kb on - strand, within MMP_RS04070 at 771.963 kb on - strand, within MMP_RS04070 at 772.031 kb on - strand, within MMP_RS04070 at 772.042 kb on + strand, within MMP_RS04070 at 772.111 kb on - strand, within MMP_RS04070 at 772.117 kb on + strand, within MMP_RS04070 at 772.118 kb on - strand, within MMP_RS04070 at 772.127 kb on - strand, within MMP_RS04070 at 772.236 kb on - strand, within MMP_RS04070 at 772.237 kb on + strand, within MMP_RS04070 at 772.245 kb on + strand, within MMP_RS04070 at 772.264 kb on - strand, within MMP_RS04070 at 772.264 kb on - strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.339 kb on + strand, within MMP_RS04070 at 772.341 kb on - strand, within MMP_RS04070 at 772.342 kb on + strand, within MMP_RS04070 at 772.373 kb on + strand, within MMP_RS04070 at 772.422 kb on - strand, within MMP_RS04070 at 772.423 kb on + strand, within MMP_RS04070 at 772.424 kb on - strand, within MMP_RS04070 at 772.462 kb on - strand, within MMP_RS04070 at 772.472 kb on - strand, within MMP_RS04070 at 772.539 kb on + strand at 773.208 kb on - strand at 773.251 kb on + strand at 773.386 kb on + strand at 773.630 kb on + strand at 773.633 kb on - strand at 773.633 kb on - strand at 773.635 kb on - strand at 773.636 kb on + strand at 773.636 kb on + strand at 773.716 kb on - strand at 773.717 kb on + strand at 773.717 kb on + strand at 773.744 kb on + strand at 773.759 kb on - strand at 773.759 kb on - strand at 773.762 kb on - strand at 773.769 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 771,725 - MMP_RS04070 0.51 +0.9 771,725 - MMP_RS04070 0.51 -2.0 771,756 - MMP_RS04070 0.52 -0.1 771,798 + MMP_RS04070 0.54 -0.4 771,811 + MMP_RS04070 0.55 -2.9 771,863 - MMP_RS04070 0.58 -0.2 771,863 - MMP_RS04070 0.58 +1.7 771,863 - MMP_RS04070 0.58 +1.8 771,925 - MMP_RS04070 0.61 -0.7 771,963 - MMP_RS04070 0.63 -0.4 772,031 - MMP_RS04070 0.66 -0.3 772,042 + MMP_RS04070 0.67 -3.4 772,111 - MMP_RS04070 0.71 +1.2 772,117 + MMP_RS04070 0.71 -0.6 772,118 - MMP_RS04070 0.71 +0.9 772,127 - MMP_RS04070 0.71 -0.7 772,236 - MMP_RS04070 0.77 -0.7 772,237 + MMP_RS04070 0.77 -0.0 772,245 + MMP_RS04070 0.77 -0.1 772,264 - MMP_RS04070 0.78 -1.9 772,264 - MMP_RS04070 0.78 -0.5 772,265 + MMP_RS04070 0.78 -1.1 772,265 + MMP_RS04070 0.78 +0.9 772,265 + MMP_RS04070 0.78 +0.4 772,265 + MMP_RS04070 0.78 +1.4 772,265 + MMP_RS04070 0.78 -0.2 772,339 + MMP_RS04070 0.82 -0.5 772,341 - MMP_RS04070 0.82 -0.6 772,342 + MMP_RS04070 0.82 -5.4 772,373 + MMP_RS04070 0.84 -0.3 772,422 - MMP_RS04070 0.87 +0.6 772,423 + MMP_RS04070 0.87 -1.2 772,424 - MMP_RS04070 0.87 -3.0 772,462 - MMP_RS04070 0.89 +0.9 772,472 - MMP_RS04070 0.89 -1.5 772,539 + +0.8 773,208 - -1.0 773,251 + -1.4 773,386 + -0.6 773,630 + +0.7 773,633 - -0.8 773,633 - -0.8 773,635 - -0.9 773,636 + +0.4 773,636 + -2.4 773,716 - -0.2 773,717 + -0.8 773,717 + +0.2 773,744 + -0.1 773,759 - -2.0 773,759 - -0.9 773,762 - +1.1 773,769 - -0.3 773,778 - +0.8 773,778 - +0.7 773,778 - -3.4 773,839 + +0.1
Or see this region's nucleotide sequence