Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04035 and MMP_RS04040 are separated by 5 nucleotides MMP_RS04040 and MMP_RS04045 are separated by 11 nucleotides MMP_RS04045 and MMP_RS04050 are separated by 100 nucleotides MMP_RS04050 and MMP_RS04055 are separated by 15 nucleotides MMP_RS04055 and MMP_RS04060 are separated by 26 nucleotides
MMP_RS04035: MMP_RS04035 - hypothetical protein, at 765,796 to 766,236
_RS04035
MMP_RS04040: MMP_RS04040 - hypothetical protein, at 766,242 to 766,721
_RS04040
MMP_RS04045: MMP_RS04045 - hypothetical protein, at 766,733 to 767,473
_RS04045
MMP_RS04050: MMP_RS04050 - hypothetical protein, at 767,574 to 767,810
_RS04050
MMP_RS04055: MMP_RS04055 - hypothetical protein, at 767,826 to 768,143
_RS04055
MMP_RS04060: MMP_RS04060 - hypothetical protein, at 768,170 to 768,685
_RS04060
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.759 kb on + strand at 766.011 kb on + strand, within MMP_RS04035 at 766.082 kb on - strand, within MMP_RS04035 at 766.361 kb on - strand, within MMP_RS04040 at 766.361 kb on - strand, within MMP_RS04040 at 766.362 kb on + strand, within MMP_RS04040 at 766.362 kb on + strand, within MMP_RS04040 at 766.363 kb on - strand, within MMP_RS04040 at 766.364 kb on + strand, within MMP_RS04040 at 766.365 kb on - strand, within MMP_RS04040 at 766.375 kb on + strand, within MMP_RS04040 at 766.413 kb on - strand, within MMP_RS04040 at 766.424 kb on - strand, within MMP_RS04040 at 766.528 kb on - strand, within MMP_RS04040 at 766.528 kb on - strand, within MMP_RS04040 at 766.529 kb on + strand, within MMP_RS04040 at 766.532 kb on - strand, within MMP_RS04040 at 766.626 kb on + strand, within MMP_RS04040 at 766.629 kb on - strand, within MMP_RS04040 at 766.757 kb on + strand at 766.819 kb on + strand, within MMP_RS04045 at 766.897 kb on - strand, within MMP_RS04045 at 766.985 kb on - strand, within MMP_RS04045 at 767.046 kb on + strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.054 kb on + strand, within MMP_RS04045 at 767.145 kb on - strand, within MMP_RS04045 at 767.182 kb on - strand, within MMP_RS04045 at 767.186 kb on - strand, within MMP_RS04045 at 767.199 kb on + strand, within MMP_RS04045 at 767.252 kb on - strand, within MMP_RS04045 at 767.274 kb on + strand, within MMP_RS04045 at 767.303 kb on - strand, within MMP_RS04045 at 767.397 kb on - strand, within MMP_RS04045 at 767.397 kb on - strand, within MMP_RS04045 at 767.398 kb on + strand, within MMP_RS04045 at 767.576 kb on + strand at 767.581 kb on + strand at 767.621 kb on - strand, within MMP_RS04050 at 767.677 kb on - strand, within MMP_RS04050 at 767.712 kb on + strand, within MMP_RS04050 at 767.742 kb on - strand, within MMP_RS04050 at 767.787 kb on - strand at 767.924 kb on + strand, within MMP_RS04055 at 768.292 kb on + strand, within MMP_RS04060 at 768.317 kb on - strand, within MMP_RS04060 at 768.425 kb on - strand, within MMP_RS04060 at 768.426 kb on + strand, within MMP_RS04060
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 765,759 + -0.4 766,011 + MMP_RS04035 0.49 +2.0 766,082 - MMP_RS04035 0.65 -0.2 766,361 - MMP_RS04040 0.25 -0.4 766,361 - MMP_RS04040 0.25 -2.0 766,362 + MMP_RS04040 0.25 -0.5 766,362 + MMP_RS04040 0.25 -3.6 766,363 - MMP_RS04040 0.25 +1.6 766,364 + MMP_RS04040 0.25 -0.5 766,365 - MMP_RS04040 0.26 +1.1 766,375 + MMP_RS04040 0.28 +2.0 766,413 - MMP_RS04040 0.36 +1.4 766,424 - MMP_RS04040 0.38 +0.2 766,528 - MMP_RS04040 0.60 -2.1 766,528 - MMP_RS04040 0.60 +0.2 766,529 + MMP_RS04040 0.60 +0.2 766,532 - MMP_RS04040 0.60 +0.5 766,626 + MMP_RS04040 0.80 -0.2 766,629 - MMP_RS04040 0.81 -0.7 766,757 + +0.5 766,819 + MMP_RS04045 0.12 -0.6 766,897 - MMP_RS04045 0.22 +1.2 766,985 - MMP_RS04045 0.34 -1.7 767,046 + MMP_RS04045 0.42 -1.5 767,053 - MMP_RS04045 0.43 +0.6 767,053 - MMP_RS04045 0.43 +0.4 767,054 + MMP_RS04045 0.43 -1.6 767,145 - MMP_RS04045 0.56 +0.9 767,182 - MMP_RS04045 0.61 -0.2 767,186 - MMP_RS04045 0.61 -1.7 767,199 + MMP_RS04045 0.63 +0.1 767,252 - MMP_RS04045 0.70 -1.3 767,274 + MMP_RS04045 0.73 -0.3 767,303 - MMP_RS04045 0.77 -2.8 767,397 - MMP_RS04045 0.90 +0.7 767,397 - MMP_RS04045 0.90 +0.4 767,398 + MMP_RS04045 0.90 +0.1 767,576 + +1.6 767,581 + +0.1 767,621 - MMP_RS04050 0.20 -0.1 767,677 - MMP_RS04050 0.43 +0.2 767,712 + MMP_RS04050 0.58 +1.8 767,742 - MMP_RS04050 0.71 +2.7 767,787 - -0.0 767,924 + MMP_RS04055 0.31 +0.6 768,292 + MMP_RS04060 0.24 -0.7 768,317 - MMP_RS04060 0.28 +0.4 768,425 - MMP_RS04060 0.49 -2.6 768,426 + MMP_RS04060 0.50 -0.4
Or see this region's nucleotide sequence