Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03670 and MMP_RS03675 are separated by 36 nucleotides MMP_RS03675 and MMP_RS03680 are separated by 4 nucleotides MMP_RS03680 and MMP_RS03685 are separated by 40 nucleotides
MMP_RS03670: MMP_RS03670 - DUF1890 domain-containing protein, at 691,982 to 692,425
_RS03670
MMP_RS03675: MMP_RS03675 - RimK family alpha-L-glutamate ligase, at 692,462 to 693,340
_RS03675
MMP_RS03680: MMP_RS03680 - hypothetical protein, at 693,345 to 694,367
_RS03680
MMP_RS03685: MMP_RS03685 - Mrp/NBP35 family ATP-binding protein, at 694,408 to 695,277
_RS03685
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 692.423 kb on - strand at 692.442 kb on + strand at 692.442 kb on + strand at 692.461 kb on - strand at 692.462 kb on + strand at 692.548 kb on - strand at 692.551 kb on - strand, within MMP_RS03675 at 692.552 kb on + strand, within MMP_RS03675 at 692.552 kb on + strand, within MMP_RS03675 at 692.553 kb on - strand, within MMP_RS03675 at 692.609 kb on + strand, within MMP_RS03675 at 692.617 kb on - strand, within MMP_RS03675 at 692.619 kb on - strand, within MMP_RS03675 at 692.619 kb on - strand, within MMP_RS03675 at 692.620 kb on + strand, within MMP_RS03675 at 692.620 kb on + strand, within MMP_RS03675 at 692.628 kb on - strand, within MMP_RS03675 at 692.692 kb on + strand, within MMP_RS03675 at 692.692 kb on + strand, within MMP_RS03675 at 692.697 kb on + strand, within MMP_RS03675 at 692.697 kb on + strand, within MMP_RS03675 at 692.709 kb on + strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.830 kb on - strand, within MMP_RS03675 at 692.830 kb on - strand, within MMP_RS03675 at 692.908 kb on + strand, within MMP_RS03675 at 692.983 kb on - strand, within MMP_RS03675 at 693.198 kb on - strand, within MMP_RS03675 at 693.199 kb on + strand, within MMP_RS03675 at 693.240 kb on - strand, within MMP_RS03675 at 693.240 kb on - strand, within MMP_RS03675 at 693.286 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.361 kb on + strand at 693.432 kb on - strand at 693.466 kb on - strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.717 kb on - strand, within MMP_RS03680 at 693.815 kb on + strand, within MMP_RS03680 at 694.043 kb on - strand, within MMP_RS03680 at 694.048 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.276 kb on + strand at 694.437 kb on - strand at 694.559 kb on + strand, within MMP_RS03685 at 694.597 kb on - strand, within MMP_RS03685 at 694.597 kb on - strand, within MMP_RS03685 at 694.598 kb on + strand, within MMP_RS03685 at 694.599 kb on - strand, within MMP_RS03685 at 694.606 kb on - strand, within MMP_RS03685 at 694.607 kb on + strand, within MMP_RS03685 at 694.627 kb on - strand, within MMP_RS03685 at 694.742 kb on + strand, within MMP_RS03685 at 694.819 kb on - strand, within MMP_RS03685 at 695.149 kb on - strand, within MMP_RS03685 at 695.172 kb on - strand, within MMP_RS03685 at 695.173 kb on + strand, within MMP_RS03685 at 695.289 kb on - strand at 695.311 kb on - strand at 695.311 kb on - strand at 695.311 kb on - strand at 695.312 kb on + strand at 695.316 kb on + strand at 695.316 kb on + strand at 695.327 kb on - strand at 695.327 kb on - strand at 695.327 kb on - strand at 695.328 kb on + strand at 695.328 kb on + strand at 695.328 kb on + strand at 695.330 kb on - strand at 695.331 kb on + strand at 695.331 kb on + strand at 695.331 kb on + strand at 695.334 kb on - strand at 695.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 692,423 - +1.0 692,442 + -0.9 692,442 + +1.0 692,461 - +2.6 692,462 + +1.1 692,548 - +1.1 692,551 - MMP_RS03675 0.10 +0.0 692,552 + MMP_RS03675 0.10 +1.3 692,552 + MMP_RS03675 0.10 +0.1 692,553 - MMP_RS03675 0.10 +1.0 692,609 + MMP_RS03675 0.17 -2.7 692,617 - MMP_RS03675 0.18 +1.3 692,619 - MMP_RS03675 0.18 +2.0 692,619 - MMP_RS03675 0.18 +0.1 692,620 + MMP_RS03675 0.18 +0.7 692,620 + MMP_RS03675 0.18 +1.0 692,628 - MMP_RS03675 0.19 +1.3 692,692 + MMP_RS03675 0.26 +1.0 692,692 + MMP_RS03675 0.26 +1.3 692,697 + MMP_RS03675 0.27 +1.1 692,697 + MMP_RS03675 0.27 -0.3 692,709 + MMP_RS03675 0.28 +0.9 692,721 - MMP_RS03675 0.29 +0.7 692,721 - MMP_RS03675 0.29 +1.8 692,721 - MMP_RS03675 0.29 -0.5 692,721 - MMP_RS03675 0.29 +0.0 692,830 - MMP_RS03675 0.42 +1.1 692,830 - MMP_RS03675 0.42 +1.5 692,908 + MMP_RS03675 0.51 +1.6 692,983 - MMP_RS03675 0.59 -1.6 693,198 - MMP_RS03675 0.84 +1.8 693,199 + MMP_RS03675 0.84 -0.2 693,240 - MMP_RS03675 0.89 +1.0 693,240 - MMP_RS03675 0.89 +1.4 693,286 + +1.6 693,359 + +0.7 693,359 + -1.5 693,359 + +0.6 693,359 + +0.8 693,361 + -0.5 693,432 - +0.0 693,466 - MMP_RS03680 0.12 +0.4 693,467 + MMP_RS03680 0.12 -0.9 693,467 + MMP_RS03680 0.12 -0.4 693,467 + MMP_RS03680 0.12 -2.0 693,717 - MMP_RS03680 0.36 -1.5 693,815 + MMP_RS03680 0.46 -1.9 694,043 - MMP_RS03680 0.68 -0.9 694,048 + MMP_RS03680 0.69 -0.6 694,067 + MMP_RS03680 0.71 -1.7 694,067 + MMP_RS03680 0.71 -3.3 694,276 + -1.1 694,437 - +0.6 694,559 + MMP_RS03685 0.17 +0.7 694,597 - MMP_RS03685 0.22 +1.2 694,597 - MMP_RS03685 0.22 -0.2 694,598 + MMP_RS03685 0.22 -0.1 694,599 - MMP_RS03685 0.22 -0.8 694,606 - MMP_RS03685 0.23 +0.4 694,607 + MMP_RS03685 0.23 +0.9 694,627 - MMP_RS03685 0.25 +0.9 694,742 + MMP_RS03685 0.38 -0.7 694,819 - MMP_RS03685 0.47 +0.1 695,149 - MMP_RS03685 0.85 -0.3 695,172 - MMP_RS03685 0.88 +1.3 695,173 + MMP_RS03685 0.88 -0.0 695,289 - +0.9 695,311 - -0.8 695,311 - -1.3 695,311 - -0.4 695,312 + -3.5 695,316 + +0.3 695,316 + +0.4 695,327 - +1.0 695,327 - +0.8 695,327 - -0.3 695,328 + +1.0 695,328 + -0.5 695,328 + -0.8 695,330 - -1.1 695,331 + +0.7 695,331 + -0.8 695,331 + -0.6 695,334 - -0.7 695,335 + +1.4
Or see this region's nucleotide sequence