Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03665

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03660 and MMP_RS03665 are separated by 23 nucleotidesMMP_RS03665 and MMP_RS03670 are separated by 194 nucleotidesMMP_RS03670 and MMP_RS03675 are separated by 36 nucleotides MMP_RS03660: MMP_RS03660 - MATE family efflux transporter, at 689,869 to 691,212 _RS03660 MMP_RS03665: MMP_RS03665 - PadR family transcriptional regulator, at 691,236 to 691,787 _RS03665 MMP_RS03670: MMP_RS03670 - DUF1890 domain-containing protein, at 691,982 to 692,425 _RS03670 MMP_RS03675: MMP_RS03675 - RimK family alpha-L-glutamate ligase, at 692,462 to 693,340 _RS03675 Position (kb) 691 692Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 690.304 kb on + strand, within MMP_RS03660at 690.306 kb on + strand, within MMP_RS03660at 690.376 kb on + strand, within MMP_RS03660at 690.413 kb on - strand, within MMP_RS03660at 690.413 kb on - strand, within MMP_RS03660at 690.414 kb on + strand, within MMP_RS03660at 690.416 kb on + strand, within MMP_RS03660at 690.457 kb on - strand, within MMP_RS03660at 690.457 kb on - strand, within MMP_RS03660at 690.457 kb on - strand, within MMP_RS03660at 690.494 kb on + strand, within MMP_RS03660at 690.577 kb on - strand, within MMP_RS03660at 690.580 kb on - strand, within MMP_RS03660at 690.611 kb on + strand, within MMP_RS03660at 690.649 kb on - strand, within MMP_RS03660at 690.652 kb on - strand, within MMP_RS03660at 690.653 kb on + strand, within MMP_RS03660at 690.658 kb on - strand, within MMP_RS03660at 690.661 kb on - strand, within MMP_RS03660at 690.662 kb on + strand, within MMP_RS03660at 690.676 kb on - strand, within MMP_RS03660at 690.676 kb on - strand, within MMP_RS03660at 690.677 kb on + strand, within MMP_RS03660at 690.685 kb on + strand, within MMP_RS03660at 690.761 kb on + strand, within MMP_RS03660at 690.804 kb on + strand, within MMP_RS03660at 690.868 kb on - strand, within MMP_RS03660at 691.007 kb on + strand, within MMP_RS03660at 691.106 kb on + strandat 691.108 kb on + strandat 691.238 kb on + strandat 691.633 kb on + strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.640 kb on + strand, within MMP_RS03665at 691.640 kb on + strand, within MMP_RS03665at 691.642 kb on - strand, within MMP_RS03665at 691.642 kb on - strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.717 kb on - strand, within MMP_RS03665at 691.717 kb on - strand, within MMP_RS03665at 691.718 kb on + strand, within MMP_RS03665at 691.718 kb on + strand, within MMP_RS03665at 691.718 kb on + strand, within MMP_RS03665at 691.758 kb on - strandat 691.759 kb on + strandat 691.789 kb on + strandat 691.801 kb on - strandat 691.839 kb on - strandat 691.843 kb on - strandat 691.843 kb on - strandat 691.844 kb on + strandat 691.845 kb on - strandat 691.871 kb on - strandat 691.875 kb on - strandat 691.876 kb on + strandat 691.898 kb on + strandat 691.905 kb on + strandat 691.933 kb on + strandat 691.956 kb on + strandat 691.956 kb on + strandat 691.956 kb on + strandat 691.956 kb on + strandat 691.967 kb on + strandat 692.053 kb on - strand, within MMP_RS03670at 692.080 kb on + strand, within MMP_RS03670at 692.141 kb on - strand, within MMP_RS03670at 692.243 kb on - strand, within MMP_RS03670at 692.251 kb on + strand, within MMP_RS03670at 692.256 kb on + strand, within MMP_RS03670at 692.423 kb on - strandat 692.442 kb on + strandat 692.442 kb on + strandat 692.461 kb on - strandat 692.462 kb on + strandat 692.548 kb on - strandat 692.551 kb on - strand, within MMP_RS03675at 692.552 kb on + strand, within MMP_RS03675at 692.552 kb on + strand, within MMP_RS03675at 692.553 kb on - strand, within MMP_RS03675at 692.609 kb on + strand, within MMP_RS03675at 692.617 kb on - strand, within MMP_RS03675at 692.619 kb on - strand, within MMP_RS03675at 692.619 kb on - strand, within MMP_RS03675at 692.620 kb on + strand, within MMP_RS03675at 692.620 kb on + strand, within MMP_RS03675at 692.628 kb on - strand, within MMP_RS03675at 692.692 kb on + strand, within MMP_RS03675at 692.692 kb on + strand, within MMP_RS03675at 692.697 kb on + strand, within MMP_RS03675at 692.697 kb on + strand, within MMP_RS03675at 692.709 kb on + strand, within MMP_RS03675at 692.721 kb on - strand, within MMP_RS03675at 692.721 kb on - strand, within MMP_RS03675at 692.721 kb on - strand, within MMP_RS03675at 692.721 kb on - strand, within MMP_RS03675

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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690,304 + MMP_RS03660 0.32 +0.4
690,306 + MMP_RS03660 0.33 +1.0
690,376 + MMP_RS03660 0.38 -1.4
690,413 - MMP_RS03660 0.40 +0.3
690,413 - MMP_RS03660 0.40 -0.6
690,414 + MMP_RS03660 0.41 +0.1
690,416 + MMP_RS03660 0.41 +1.1
690,457 - MMP_RS03660 0.44 +0.1
690,457 - MMP_RS03660 0.44 +1.8
690,457 - MMP_RS03660 0.44 -0.3
690,494 + MMP_RS03660 0.47 +0.1
690,577 - MMP_RS03660 0.53 +0.6
690,580 - MMP_RS03660 0.53 +0.1
690,611 + MMP_RS03660 0.55 +0.5
690,649 - MMP_RS03660 0.58 +1.1
690,652 - MMP_RS03660 0.58 +1.0
690,653 + MMP_RS03660 0.58 -1.0
690,658 - MMP_RS03660 0.59 +0.1
690,661 - MMP_RS03660 0.59 -0.2
690,662 + MMP_RS03660 0.59 +1.5
690,676 - MMP_RS03660 0.60 +1.6
690,676 - MMP_RS03660 0.60 +0.8
690,677 + MMP_RS03660 0.60 +2.5
690,685 + MMP_RS03660 0.61 -0.2
690,761 + MMP_RS03660 0.66 -0.2
690,804 + MMP_RS03660 0.70 +1.8
690,868 - MMP_RS03660 0.74 +1.2
691,007 + MMP_RS03660 0.85 +1.0
691,106 + +0.7
691,108 + +0.2
691,238 + -1.5
691,633 + MMP_RS03665 0.72 +0.8
691,639 - MMP_RS03665 0.73 +1.6
691,639 - MMP_RS03665 0.73 -0.1
691,639 - MMP_RS03665 0.73 +0.8
691,639 - MMP_RS03665 0.73 +0.1
691,639 - MMP_RS03665 0.73 +0.5
691,640 + MMP_RS03665 0.73 -0.3
691,640 + MMP_RS03665 0.73 +2.1
691,642 - MMP_RS03665 0.74 +0.6
691,642 - MMP_RS03665 0.74 -0.2
691,643 + MMP_RS03665 0.74 +2.0
691,643 + MMP_RS03665 0.74 +0.8
691,643 + MMP_RS03665 0.74 +1.0
691,643 + MMP_RS03665 0.74 +0.6
691,643 + MMP_RS03665 0.74 +1.1
691,717 - MMP_RS03665 0.87 -1.6
691,717 - MMP_RS03665 0.87 +0.7
691,718 + MMP_RS03665 0.87 +0.4
691,718 + MMP_RS03665 0.87 +1.1
691,718 + MMP_RS03665 0.87 -0.0
691,758 - +1.6
691,759 + -1.3
691,789 + +1.0
691,801 - -0.1
691,839 - +0.4
691,843 - -0.0
691,843 - +1.8
691,844 + +0.3
691,845 - -0.3
691,871 - -1.2
691,875 - -1.0
691,876 + +1.6
691,898 + +0.2
691,905 + +0.8
691,933 + -0.1
691,956 + +0.6
691,956 + -0.6
691,956 + -0.1
691,956 + -1.1
691,967 + +1.3
692,053 - MMP_RS03670 0.16 +0.4
692,080 + MMP_RS03670 0.22 -3.1
692,141 - MMP_RS03670 0.36 +0.1
692,243 - MMP_RS03670 0.59 +0.0
692,251 + MMP_RS03670 0.61 +0.5
692,256 + MMP_RS03670 0.62 +0.5
692,423 - +1.0
692,442 + -0.9
692,442 + +1.0
692,461 - +2.6
692,462 + +1.1
692,548 - +1.1
692,551 - MMP_RS03675 0.10 +0.0
692,552 + MMP_RS03675 0.10 +1.3
692,552 + MMP_RS03675 0.10 +0.1
692,553 - MMP_RS03675 0.10 +1.0
692,609 + MMP_RS03675 0.17 -2.7
692,617 - MMP_RS03675 0.18 +1.3
692,619 - MMP_RS03675 0.18 +2.0
692,619 - MMP_RS03675 0.18 +0.1
692,620 + MMP_RS03675 0.18 +0.7
692,620 + MMP_RS03675 0.18 +1.0
692,628 - MMP_RS03675 0.19 +1.3
692,692 + MMP_RS03675 0.26 +1.0
692,692 + MMP_RS03675 0.26 +1.3
692,697 + MMP_RS03675 0.27 +1.1
692,697 + MMP_RS03675 0.27 -0.3
692,709 + MMP_RS03675 0.28 +0.9
692,721 - MMP_RS03675 0.29 +0.7
692,721 - MMP_RS03675 0.29 +1.8
692,721 - MMP_RS03675 0.29 -0.5
692,721 - MMP_RS03675 0.29 +0.0

Or see this region's nucleotide sequence