Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03545 and MMP_RS03550 are separated by 95 nucleotides MMP_RS03550 and MMP_RS03555 are separated by 122 nucleotides
MMP_RS03545: MMP_RS03545 - ATP-binding protein, at 663,550 to 664,947
_RS03545
MMP_RS03550: MMP_RS03550 - DUF2124 domain-containing protein, at 665,043 to 665,519
_RS03550
MMP_RS03555: MMP_RS03555 - transcriptional regulator, at 665,642 to 666,622
_RS03555
Position (kb) 665
666 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 664.239 kb on - strand, within MMP_RS03545 at 664.295 kb on + strand, within MMP_RS03545 at 664.297 kb on - strand, within MMP_RS03545 at 664.552 kb on - strand, within MMP_RS03545 at 664.579 kb on - strand, within MMP_RS03545 at 664.683 kb on + strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.728 kb on - strand, within MMP_RS03545 at 664.751 kb on - strand, within MMP_RS03545 at 664.752 kb on + strand, within MMP_RS03545 at 664.809 kb on - strand at 664.855 kb on - strand at 664.859 kb on + strand at 664.942 kb on - strand at 664.953 kb on - strand at 664.982 kb on + strand at 664.984 kb on - strand at 665.278 kb on + strand, within MMP_RS03550 at 665.353 kb on - strand, within MMP_RS03550 at 665.478 kb on - strand at 665.546 kb on + strand at 665.552 kb on - strand at 665.552 kb on - strand at 665.553 kb on + strand at 665.553 kb on + strand at 665.553 kb on + strand at 665.556 kb on + strand at 665.556 kb on + strand at 665.578 kb on + strand at 665.754 kb on - strand, within MMP_RS03555 at 665.785 kb on + strand, within MMP_RS03555 at 665.785 kb on + strand, within MMP_RS03555 at 665.788 kb on - strand, within MMP_RS03555 at 666.107 kb on - strand, within MMP_RS03555 at 666.165 kb on - strand, within MMP_RS03555 at 666.166 kb on + strand, within MMP_RS03555 at 666.166 kb on + strand, within MMP_RS03555 at 666.166 kb on + strand, within MMP_RS03555 at 666.166 kb on + strand, within MMP_RS03555 at 666.397 kb on - strand, within MMP_RS03555 at 666.404 kb on + strand, within MMP_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 664,239 - MMP_RS03545 0.49 -0.6 664,295 + MMP_RS03545 0.53 +1.5 664,297 - MMP_RS03545 0.53 +0.4 664,552 - MMP_RS03545 0.72 +0.6 664,579 - MMP_RS03545 0.74 +0.5 664,683 + MMP_RS03545 0.81 -1.7 664,726 - MMP_RS03545 0.84 -0.2 664,726 - MMP_RS03545 0.84 -0.9 664,726 - MMP_RS03545 0.84 -1.0 664,728 - MMP_RS03545 0.84 -0.8 664,751 - MMP_RS03545 0.86 -2.0 664,752 + MMP_RS03545 0.86 -0.1 664,809 - -1.0 664,855 - +0.6 664,859 + +0.4 664,942 - +1.6 664,953 - +2.0 664,982 + +1.6 664,984 - -0.2 665,278 + MMP_RS03550 0.49 -3.8 665,353 - MMP_RS03550 0.65 +0.1 665,478 - +0.9 665,546 + +1.4 665,552 - +0.4 665,552 - -1.6 665,553 + +1.2 665,553 + +2.1 665,553 + -1.2 665,556 + -2.0 665,556 + -1.4 665,578 + -3.1 665,754 - MMP_RS03555 0.11 -1.5 665,785 + MMP_RS03555 0.15 -0.9 665,785 + MMP_RS03555 0.15 -4.2 665,788 - MMP_RS03555 0.15 -2.1 666,107 - MMP_RS03555 0.47 -2.9 666,165 - MMP_RS03555 0.53 -1.0 666,166 + MMP_RS03555 0.53 -2.7 666,166 + MMP_RS03555 0.53 -3.4 666,166 + MMP_RS03555 0.53 -2.0 666,166 + MMP_RS03555 0.53 -4.0 666,397 - MMP_RS03555 0.77 -1.6 666,404 + MMP_RS03555 0.78 +0.6
Or see this region's nucleotide sequence