Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03480 and MMP_RS03485 are separated by 27 nucleotides MMP_RS03485 and MMP_RS03490 are separated by 43 nucleotides MMP_RS03490 and MMP_RS03495 are separated by 62 nucleotides
MMP_RS03480: MMP_RS03480 - SulP family inorganic anion transporter, at 652,337 to 653,956
_RS03480
MMP_RS03485: MMP_RS03485 - TIGR00267 family protein, at 653,984 to 654,544
_RS03485
MMP_RS03490: MMP_RS03490 - DUF2115 domain-containing protein, at 654,588 to 655,076
_RS03490
MMP_RS03495: MMP_RS03495 - Na/Pi cotransporter family protein, at 655,139 to 656,764
_RS03495
Position (kb) 653
654
655 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 653.107 kb on - strand, within MMP_RS03480 at 653.219 kb on + strand, within MMP_RS03480 at 653.219 kb on + strand, within MMP_RS03480 at 653.362 kb on + strand, within MMP_RS03480 at 653.364 kb on - strand, within MMP_RS03480 at 653.365 kb on + strand, within MMP_RS03480 at 653.378 kb on + strand, within MMP_RS03480 at 653.382 kb on - strand, within MMP_RS03480 at 653.448 kb on - strand, within MMP_RS03480 at 653.470 kb on - strand, within MMP_RS03480 at 653.512 kb on + strand, within MMP_RS03480 at 653.623 kb on + strand, within MMP_RS03480 at 653.660 kb on - strand, within MMP_RS03480 at 653.660 kb on - strand, within MMP_RS03480 at 653.749 kb on + strand, within MMP_RS03480 at 653.899 kb on + strand at 654.035 kb on - strand at 654.164 kb on + strand, within MMP_RS03485 at 654.296 kb on - strand, within MMP_RS03485 at 654.296 kb on - strand, within MMP_RS03485 at 654.297 kb on + strand, within MMP_RS03485 at 654.340 kb on + strand, within MMP_RS03485 at 654.546 kb on - strand at 654.546 kb on - strand at 654.546 kb on - strand at 654.554 kb on + strand at 654.557 kb on - strand at 654.557 kb on - strand at 654.557 kb on - strand at 654.558 kb on + strand at 654.611 kb on - strand at 654.947 kb on - strand, within MMP_RS03490 at 655.089 kb on - strand at 655.094 kb on - strand at 655.140 kb on - strand at 655.234 kb on - strand at 655.395 kb on + strand, within MMP_RS03495 at 655.398 kb on + strand, within MMP_RS03495 at 655.482 kb on + strand, within MMP_RS03495 at 655.528 kb on - strand, within MMP_RS03495 at 655.532 kb on - strand, within MMP_RS03495 at 655.532 kb on - strand, within MMP_RS03495 at 655.533 kb on + strand, within MMP_RS03495
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 653,107 - MMP_RS03480 0.48 -0.3 653,219 + MMP_RS03480 0.54 -0.2 653,219 + MMP_RS03480 0.54 +1.6 653,362 + MMP_RS03480 0.63 +1.5 653,364 - MMP_RS03480 0.63 -0.1 653,365 + MMP_RS03480 0.63 -0.9 653,378 + MMP_RS03480 0.64 -0.8 653,382 - MMP_RS03480 0.65 +1.3 653,448 - MMP_RS03480 0.69 +1.1 653,470 - MMP_RS03480 0.70 -1.7 653,512 + MMP_RS03480 0.73 -0.4 653,623 + MMP_RS03480 0.79 -1.1 653,660 - MMP_RS03480 0.82 +1.0 653,660 - MMP_RS03480 0.82 +1.1 653,749 + MMP_RS03480 0.87 +0.3 653,899 + +0.6 654,035 - +0.7 654,164 + MMP_RS03485 0.32 -0.8 654,296 - MMP_RS03485 0.56 +0.2 654,296 - MMP_RS03485 0.56 +1.7 654,297 + MMP_RS03485 0.56 +3.4 654,340 + MMP_RS03485 0.63 -0.1 654,546 - +1.2 654,546 - -0.0 654,546 - +1.8 654,554 + -1.4 654,557 - -3.0 654,557 - +0.3 654,557 - -3.7 654,558 + +0.8 654,611 - -1.9 654,947 - MMP_RS03490 0.73 +0.2 655,089 - -4.4 655,094 - -0.6 655,140 - +1.4 655,234 - -1.8 655,395 + MMP_RS03495 0.16 +0.6 655,398 + MMP_RS03495 0.16 +1.3 655,482 + MMP_RS03495 0.21 +2.7 655,528 - MMP_RS03495 0.24 +1.4 655,532 - MMP_RS03495 0.24 +1.2 655,532 - MMP_RS03495 0.24 +2.8 655,533 + MMP_RS03495 0.24 +0.4
Or see this region's nucleotide sequence