Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03200 and MMP_RS03205 are separated by 136 nucleotides MMP_RS03205 and MMP_RS03210 are separated by 147 nucleotides MMP_RS03210 and MMP_RS03215 are separated by 52 nucleotides MMP_RS03215 and MMP_RS03220 are separated by 1 nucleotides
MMP_RS03200: MMP_RS03200 - methanogenesis marker 15 protein, at 603,102 to 604,337
_RS03200
MMP_RS03205: MMP_RS03205 - peptidyl-tRNA hydrolase Pth2, at 604,474 to 604,824
_RS03205
MMP_RS03210: MMP_RS03210 - tRNA guanosine(15) transglycosylase TgtA, at 604,972 to 606,921
_RS03210
MMP_RS03215: MMP_RS03215 - MBL fold metallo-hydrolase, at 606,974 to 607,516
_RS03215
MMP_RS03220: MMP_RS03220 - RNA 2' 3'-cyclic phosphodiesterase, at 607,518 to 608,042
_RS03220
Position (kb) 604
605
606
607 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 604.216 kb on - strand at 604.242 kb on + strand at 604.429 kb on - strand at 604.430 kb on + strand at 604.434 kb on - strand at 604.475 kb on - strand at 604.481 kb on + strand at 604.486 kb on - strand at 604.545 kb on - strand, within MMP_RS03205 at 604.699 kb on + strand, within MMP_RS03205 at 604.821 kb on + strand at 604.876 kb on + strand at 604.879 kb on + strand at 604.880 kb on - strand at 604.881 kb on + strand at 604.881 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.916 kb on - strand at 604.961 kb on + strand at 604.961 kb on + strand at 605.147 kb on - strand at 605.270 kb on - strand, within MMP_RS03210 at 605.270 kb on - strand, within MMP_RS03210 at 605.271 kb on + strand, within MMP_RS03210 at 605.457 kb on - strand, within MMP_RS03210 at 605.467 kb on + strand, within MMP_RS03210 at 605.483 kb on + strand, within MMP_RS03210 at 605.555 kb on - strand, within MMP_RS03210 at 605.555 kb on - strand, within MMP_RS03210 at 605.601 kb on - strand, within MMP_RS03210 at 605.749 kb on - strand, within MMP_RS03210 at 605.822 kb on - strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210 at 605.833 kb on - strand, within MMP_RS03210 at 605.907 kb on - strand, within MMP_RS03210 at 606.018 kb on - strand, within MMP_RS03210 at 606.028 kb on - strand, within MMP_RS03210 at 606.092 kb on + strand, within MMP_RS03210 at 606.106 kb on + strand, within MMP_RS03210 at 606.106 kb on + strand, within MMP_RS03210 at 606.163 kb on - strand, within MMP_RS03210 at 606.187 kb on + strand, within MMP_RS03210 at 606.212 kb on - strand, within MMP_RS03210 at 606.213 kb on + strand, within MMP_RS03210 at 606.240 kb on + strand, within MMP_RS03210 at 606.401 kb on - strand, within MMP_RS03210 at 606.410 kb on + strand, within MMP_RS03210 at 606.410 kb on + strand, within MMP_RS03210 at 606.415 kb on - strand, within MMP_RS03210 at 606.419 kb on + strand, within MMP_RS03210 at 606.422 kb on - strand, within MMP_RS03210 at 606.423 kb on + strand, within MMP_RS03210 at 606.423 kb on + strand, within MMP_RS03210 at 606.503 kb on + strand, within MMP_RS03210 at 606.665 kb on - strand, within MMP_RS03210 at 606.698 kb on - strand, within MMP_RS03210 at 606.848 kb on - strand at 606.851 kb on - strand at 606.851 kb on - strand at 606.934 kb on + strand at 606.944 kb on - strand at 606.990 kb on + strand at 607.054 kb on - strand, within MMP_RS03215 at 607.055 kb on + strand, within MMP_RS03215 at 607.059 kb on + strand, within MMP_RS03215 at 607.170 kb on + strand, within MMP_RS03215 at 607.172 kb on + strand, within MMP_RS03215 at 607.172 kb on + strand, within MMP_RS03215 at 607.174 kb on - strand, within MMP_RS03215 at 607.175 kb on + strand, within MMP_RS03215 at 607.177 kb on + strand, within MMP_RS03215 at 607.177 kb on + strand, within MMP_RS03215 at 607.177 kb on + strand, within MMP_RS03215 at 607.177 kb on + strand, within MMP_RS03215 at 607.241 kb on + strand, within MMP_RS03215 at 607.330 kb on + strand, within MMP_RS03215 at 607.343 kb on - strand, within MMP_RS03215 at 607.405 kb on - strand, within MMP_RS03215 at 607.414 kb on + strand, within MMP_RS03215 at 607.414 kb on + strand, within MMP_RS03215 at 607.453 kb on + strand, within MMP_RS03215 at 607.474 kb on + strand at 607.474 kb on + strand at 607.520 kb on + strand at 607.559 kb on - strand at 607.560 kb on + strand at 607.560 kb on + strand at 607.569 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 604,216 - -2.6 604,242 + -3.7 604,429 - -0.0 604,430 + +0.9 604,434 - +0.1 604,475 - +0.4 604,481 + -2.4 604,486 - -1.7 604,545 - MMP_RS03205 0.20 -3.6 604,699 + MMP_RS03205 0.64 -3.6 604,821 + -4.4 604,876 + +1.1 604,879 + -2.5 604,880 - -0.8 604,881 + -0.1 604,881 + -0.8 604,885 + -0.2 604,885 + -0.2 604,885 + -2.3 604,885 + -0.3 604,916 - -2.0 604,961 + -1.3 604,961 + +1.1 605,147 - +0.2 605,270 - MMP_RS03210 0.15 +0.2 605,270 - MMP_RS03210 0.15 -5.1 605,271 + MMP_RS03210 0.15 -0.3 605,457 - MMP_RS03210 0.25 -2.1 605,467 + MMP_RS03210 0.25 -4.1 605,483 + MMP_RS03210 0.26 -2.1 605,555 - MMP_RS03210 0.30 +0.2 605,555 - MMP_RS03210 0.30 -1.3 605,601 - MMP_RS03210 0.32 -0.5 605,749 - MMP_RS03210 0.40 -1.4 605,822 - MMP_RS03210 0.44 -1.1 605,823 + MMP_RS03210 0.44 -1.4 605,823 + MMP_RS03210 0.44 -0.9 605,823 + MMP_RS03210 0.44 -1.3 605,833 - MMP_RS03210 0.44 -3.1 605,907 - MMP_RS03210 0.48 -0.4 606,018 - MMP_RS03210 0.54 -5.3 606,028 - MMP_RS03210 0.54 -1.9 606,092 + MMP_RS03210 0.57 -0.6 606,106 + MMP_RS03210 0.58 -1.7 606,106 + MMP_RS03210 0.58 +0.3 606,163 - MMP_RS03210 0.61 -2.9 606,187 + MMP_RS03210 0.62 +0.1 606,212 - MMP_RS03210 0.64 -0.7 606,213 + MMP_RS03210 0.64 -2.3 606,240 + MMP_RS03210 0.65 -0.7 606,401 - MMP_RS03210 0.73 -6.3 606,410 + MMP_RS03210 0.74 +0.3 606,410 + MMP_RS03210 0.74 +0.9 606,415 - MMP_RS03210 0.74 -1.3 606,419 + MMP_RS03210 0.74 -0.0 606,422 - MMP_RS03210 0.74 -0.4 606,423 + MMP_RS03210 0.74 -0.9 606,423 + MMP_RS03210 0.74 -4.8 606,503 + MMP_RS03210 0.79 -0.8 606,665 - MMP_RS03210 0.87 -2.3 606,698 - MMP_RS03210 0.89 -0.8 606,848 - +0.9 606,851 - -0.8 606,851 - +0.4 606,934 + -0.0 606,944 - +1.9 606,990 + +1.2 607,054 - MMP_RS03215 0.15 +1.4 607,055 + MMP_RS03215 0.15 +1.8 607,059 + MMP_RS03215 0.16 +1.4 607,170 + MMP_RS03215 0.36 -2.1 607,172 + MMP_RS03215 0.36 +2.3 607,172 + MMP_RS03215 0.36 +1.9 607,174 - MMP_RS03215 0.37 +1.8 607,175 + MMP_RS03215 0.37 +1.6 607,177 + MMP_RS03215 0.37 -4.3 607,177 + MMP_RS03215 0.37 +1.8 607,177 + MMP_RS03215 0.37 +2.5 607,177 + MMP_RS03215 0.37 +0.0 607,241 + MMP_RS03215 0.49 +1.9 607,330 + MMP_RS03215 0.66 +2.0 607,343 - MMP_RS03215 0.68 +1.4 607,405 - MMP_RS03215 0.79 +2.5 607,414 + MMP_RS03215 0.81 -0.1 607,414 + MMP_RS03215 0.81 +0.6 607,453 + MMP_RS03215 0.88 +1.8 607,474 + +0.8 607,474 + +0.7 607,520 + +0.9 607,559 - +1.0 607,560 + -0.2 607,560 + +1.6 607,569 + -0.3
Or see this region's nucleotide sequence