Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03110 and MMP_RS03115 are separated by 36 nucleotides MMP_RS03115 and MMP_RS03120 are separated by 10 nucleotides MMP_RS03120 and MMP_RS03125 overlap by 4 nucleotides MMP_RS03125 and MMP_RS03130 are separated by 76 nucleotides MMP_RS03130 and MMP_RS03135 are separated by 18 nucleotides
MMP_RS03110: MMP_RS03110 - glycosyltransferase family 2 protein, at 587,336 to 588,031
_RS03110
MMP_RS03115: MMP_RS03115 - hypothetical protein, at 588,068 to 588,727
_RS03115
MMP_RS03120: MMP_RS03120 - hypothetical protein, at 588,738 to 588,920
_RS03120
MMP_RS03125: MMP_RS03125 - cell division ATPase MinD, at 588,917 to 589,702
_RS03125
MMP_RS03130: MMP_RS03130 - hypothetical protein, at 589,779 to 590,345
_RS03130
MMP_RS03135: MMP_RS03135 - O-phosphoseryl-tRNA(Sec) selenium transferase, at 590,364 to 591,674
_RS03135
Position (kb)
588
589
590 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 587.920 kb on - strand, within MMP_RS03110 at 587.939 kb on - strand, within MMP_RS03110 at 587.961 kb on + strand, within MMP_RS03110 at 588.047 kb on + strand at 588.065 kb on + strand at 588.101 kb on - strand at 588.101 kb on - strand at 588.101 kb on - strand at 588.101 kb on - strand at 588.102 kb on + strand at 588.102 kb on + strand at 588.104 kb on - strand at 588.106 kb on - strand at 588.107 kb on + strand at 588.110 kb on - strand at 588.111 kb on + strand at 588.116 kb on - strand at 588.128 kb on - strand at 588.128 kb on - strand at 588.128 kb on - strand at 588.129 kb on + strand at 588.130 kb on - strand at 588.130 kb on - strand at 588.130 kb on - strand at 588.131 kb on + strand at 588.131 kb on + strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.133 kb on + strand at 588.133 kb on + strand at 588.135 kb on - strand, within MMP_RS03115 at 588.135 kb on - strand, within MMP_RS03115 at 588.135 kb on - strand, within MMP_RS03115 at 588.135 kb on - strand, within MMP_RS03115 at 588.135 kb on - strand, within MMP_RS03115 at 588.135 kb on - strand, within MMP_RS03115 at 588.135 kb on - strand, within MMP_RS03115 at 588.135 kb on - strand, within MMP_RS03115 at 588.136 kb on + strand, within MMP_RS03115 at 588.136 kb on + strand, within MMP_RS03115 at 588.136 kb on + strand, within MMP_RS03115 at 588.136 kb on + strand, within MMP_RS03115 at 588.136 kb on + strand, within MMP_RS03115 at 588.136 kb on + strand, within MMP_RS03115 at 588.136 kb on + strand, within MMP_RS03115 at 588.136 kb on + strand, within MMP_RS03115 at 588.137 kb on - strand, within MMP_RS03115 at 588.137 kb on - strand, within MMP_RS03115 at 588.138 kb on + strand, within MMP_RS03115 at 588.139 kb on - strand, within MMP_RS03115 at 588.140 kb on + strand, within MMP_RS03115 at 588.202 kb on - strand, within MMP_RS03115 at 588.203 kb on + strand, within MMP_RS03115 at 588.209 kb on + strand, within MMP_RS03115 at 588.220 kb on - strand, within MMP_RS03115 at 588.225 kb on + strand, within MMP_RS03115 at 588.253 kb on - strand, within MMP_RS03115 at 588.253 kb on - strand, within MMP_RS03115 at 588.254 kb on + strand, within MMP_RS03115 at 588.272 kb on + strand, within MMP_RS03115 at 588.289 kb on - strand, within MMP_RS03115 at 588.290 kb on + strand, within MMP_RS03115 at 588.341 kb on + strand, within MMP_RS03115 at 588.344 kb on - strand, within MMP_RS03115 at 588.493 kb on - strand, within MMP_RS03115 at 588.498 kb on + strand, within MMP_RS03115 at 588.498 kb on + strand, within MMP_RS03115 at 588.524 kb on - strand, within MMP_RS03115 at 588.524 kb on - strand, within MMP_RS03115 at 588.524 kb on - strand, within MMP_RS03115 at 588.525 kb on + strand, within MMP_RS03115 at 588.525 kb on + strand, within MMP_RS03115 at 588.525 kb on + strand, within MMP_RS03115 at 588.538 kb on + strand, within MMP_RS03115 at 588.554 kb on + strand, within MMP_RS03115 at 588.581 kb on + strand, within MMP_RS03115 at 588.689 kb on - strand at 588.712 kb on + strand at 588.717 kb on + strand at 588.727 kb on - strand at 588.728 kb on + strand at 588.880 kb on + strand, within MMP_RS03120 at 588.880 kb on + strand, within MMP_RS03120 at 588.888 kb on - strand, within MMP_RS03120 at 588.891 kb on - strand, within MMP_RS03120 at 588.938 kb on - strand at 588.993 kb on - strand at 589.069 kb on - strand, within MMP_RS03125 at 589.129 kb on - strand, within MMP_RS03125 at 589.284 kb on + strand, within MMP_RS03125 at 589.295 kb on - strand, within MMP_RS03125 at 589.322 kb on + strand, within MMP_RS03125 at 589.596 kb on + strand, within MMP_RS03125 at 589.683 kb on + strand at 589.736 kb on - strand at 589.737 kb on + strand at 589.737 kb on + strand at 589.738 kb on - strand at 589.738 kb on - strand at 589.738 kb on - strand at 589.739 kb on + strand at 589.739 kb on + strand at 589.739 kb on + strand at 589.739 kb on + strand at 589.739 kb on + strand at 589.740 kb on - strand at 589.741 kb on + strand at 589.746 kb on + strand at 589.754 kb on + strand at 589.764 kb on - strand at 589.767 kb on - strand at 589.767 kb on - strand at 589.767 kb on - strand at 589.767 kb on - strand at 589.768 kb on + strand at 589.769 kb on - strand at 589.769 kb on - strand at 589.780 kb on - strand at 589.827 kb on + strand at 589.827 kb on + strand at 589.887 kb on + strand, within MMP_RS03130 at 589.889 kb on - strand, within MMP_RS03130 at 589.897 kb on + strand, within MMP_RS03130 at 590.016 kb on + strand, within MMP_RS03130 at 590.031 kb on - strand, within MMP_RS03130 at 590.055 kb on - strand, within MMP_RS03130 at 590.060 kb on - strand, within MMP_RS03130 at 590.100 kb on + strand, within MMP_RS03130 at 590.100 kb on + strand, within MMP_RS03130 at 590.103 kb on + strand, within MMP_RS03130 at 590.267 kb on - strand, within MMP_RS03130 at 590.277 kb on - strand, within MMP_RS03130 at 590.323 kb on - strand at 590.387 kb on - strand at 590.401 kb on + strand at 590.446 kb on - strand at 590.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 587,920 - MMP_RS03110 0.84 -2.1 587,939 - MMP_RS03110 0.87 +0.1 587,961 + MMP_RS03110 0.90 -3.1 588,047 + +0.9 588,065 + -0.2 588,101 - -0.2 588,101 - -1.3 588,101 - -2.1 588,101 - -0.9 588,102 + -3.0 588,102 + +0.2 588,104 - -5.1 588,106 - +1.8 588,107 + -3.0 588,110 - +1.5 588,111 + -0.9 588,116 - -4.1 588,128 - +1.1 588,128 - -5.7 588,128 - -0.2 588,129 + +1.6 588,130 - +0.6 588,130 - +0.8 588,130 - +0.3 588,131 + -2.9 588,131 + +0.7 588,132 - -1.2 588,132 - -0.0 588,132 - +0.5 588,132 - +0.2 588,132 - -0.1 588,132 - -0.9 588,132 - -0.6 588,132 - +1.0 588,132 - -0.6 588,132 - +1.3 588,132 - -0.2 588,133 + +1.8 588,133 + -0.7 588,135 - MMP_RS03115 0.10 +1.0 588,135 - MMP_RS03115 0.10 +2.2 588,135 - MMP_RS03115 0.10 +1.1 588,135 - MMP_RS03115 0.10 +1.1 588,135 - MMP_RS03115 0.10 +1.6 588,135 - MMP_RS03115 0.10 -2.6 588,135 - MMP_RS03115 0.10 +1.6 588,135 - MMP_RS03115 0.10 +1.4 588,136 + MMP_RS03115 0.10 -2.3 588,136 + MMP_RS03115 0.10 +0.8 588,136 + MMP_RS03115 0.10 +2.1 588,136 + MMP_RS03115 0.10 +0.8 588,136 + MMP_RS03115 0.10 +0.3 588,136 + MMP_RS03115 0.10 -0.5 588,136 + MMP_RS03115 0.10 -1.5 588,136 + MMP_RS03115 0.10 +0.3 588,137 - MMP_RS03115 0.10 +0.9 588,137 - MMP_RS03115 0.10 -0.4 588,138 + MMP_RS03115 0.11 +0.9 588,139 - MMP_RS03115 0.11 +1.7 588,140 + MMP_RS03115 0.11 -2.0 588,202 - MMP_RS03115 0.20 +0.5 588,203 + MMP_RS03115 0.20 -0.2 588,209 + MMP_RS03115 0.21 -0.2 588,220 - MMP_RS03115 0.23 -0.0 588,225 + MMP_RS03115 0.24 +0.7 588,253 - MMP_RS03115 0.28 -2.1 588,253 - MMP_RS03115 0.28 +1.4 588,254 + MMP_RS03115 0.28 +0.4 588,272 + MMP_RS03115 0.31 -1.7 588,289 - MMP_RS03115 0.33 -0.4 588,290 + MMP_RS03115 0.34 -0.2 588,341 + MMP_RS03115 0.41 +0.4 588,344 - MMP_RS03115 0.42 +0.5 588,493 - MMP_RS03115 0.64 -2.9 588,498 + MMP_RS03115 0.65 +0.0 588,498 + MMP_RS03115 0.65 -0.1 588,524 - MMP_RS03115 0.69 +0.2 588,524 - MMP_RS03115 0.69 +0.6 588,524 - MMP_RS03115 0.69 -0.8 588,525 + MMP_RS03115 0.69 +0.9 588,525 + MMP_RS03115 0.69 +0.2 588,525 + MMP_RS03115 0.69 -1.4 588,538 + MMP_RS03115 0.71 -0.0 588,554 + MMP_RS03115 0.74 -0.3 588,581 + MMP_RS03115 0.78 -0.6 588,689 - +0.3 588,712 + -1.8 588,717 + +1.2 588,727 - +0.9 588,728 + +0.8 588,880 + MMP_RS03120 0.78 -0.2 588,880 + MMP_RS03120 0.78 -0.9 588,888 - MMP_RS03120 0.82 -0.8 588,891 - MMP_RS03120 0.84 +0.9 588,938 - +1.3 588,993 - -4.5 589,069 - MMP_RS03125 0.19 -0.9 589,129 - MMP_RS03125 0.27 -3.1 589,284 + MMP_RS03125 0.47 -1.8 589,295 - MMP_RS03125 0.48 -4.4 589,322 + MMP_RS03125 0.52 -2.0 589,596 + MMP_RS03125 0.86 -2.0 589,683 + -4.4 589,736 - -1.1 589,737 + -3.5 589,737 + -1.2 589,738 - -1.7 589,738 - -1.8 589,738 - -2.4 589,739 + -2.0 589,739 + -0.1 589,739 + -3.2 589,739 + -4.7 589,739 + -2.6 589,740 - -1.9 589,741 + -1.0 589,746 + -0.3 589,754 + -4.7 589,764 - -0.9 589,767 - -2.8 589,767 - -2.1 589,767 - -2.0 589,767 - -0.6 589,768 + -4.4 589,769 - -1.5 589,769 - -0.8 589,780 - +1.0 589,827 + -3.5 589,827 + -0.0 589,887 + MMP_RS03130 0.19 +2.1 589,889 - MMP_RS03130 0.19 +0.7 589,897 + MMP_RS03130 0.21 -0.1 590,016 + MMP_RS03130 0.42 +1.3 590,031 - MMP_RS03130 0.44 +0.7 590,055 - MMP_RS03130 0.49 +1.4 590,060 - MMP_RS03130 0.50 +1.1 590,100 + MMP_RS03130 0.57 +0.8 590,100 + MMP_RS03130 0.57 +2.1 590,103 + MMP_RS03130 0.57 +1.4 590,267 - MMP_RS03130 0.86 -4.0 590,277 - MMP_RS03130 0.88 -0.3 590,323 - -0.6 590,387 - -1.4 590,401 + -1.2 590,446 - -1.8 590,528 - -4.4
Or see this region's nucleotide sequence