Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03005

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02995 and MMP_RS03000 are separated by 22 nucleotidesMMP_RS03000 and MMP_RS03005 are separated by 190 nucleotidesMMP_RS03005 and MMP_RS03010 are separated by 73 nucleotidesMMP_RS03010 and MMP_RS03015 are separated by 8 nucleotides MMP_RS02995: MMP_RS02995 - acyl-CoA thioesterase, at 567,367 to 567,774 _RS02995 MMP_RS03000: MMP_RS03000 - cupin domain-containing protein, at 567,797 to 568,336 _RS03000 MMP_RS03005: MMP_RS03005 - S-layer protein, at 568,527 to 570,113 _RS03005 MMP_RS03010: MMP_RS03010 - cupin domain-containing protein, at 570,187 to 570,687 _RS03010 MMP_RS03015: MMP_RS03015 - GTP 3' 8-cyclase MoaA, at 570,696 to 571,589 _RS03015 Position (kb) 568 569 570 571Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 567.549 kb on + strand, within MMP_RS02995at 567.578 kb on - strand, within MMP_RS02995at 567.578 kb on - strand, within MMP_RS02995at 567.641 kb on + strand, within MMP_RS02995at 567.681 kb on - strand, within MMP_RS02995at 567.718 kb on - strand, within MMP_RS02995at 567.810 kb on - strandat 567.811 kb on + strandat 567.811 kb on + strandat 567.812 kb on - strandat 567.815 kb on - strandat 567.815 kb on - strandat 567.816 kb on + strandat 567.854 kb on - strand, within MMP_RS03000at 567.855 kb on + strand, within MMP_RS03000at 567.855 kb on + strand, within MMP_RS03000at 567.869 kb on - strand, within MMP_RS03000at 567.870 kb on + strand, within MMP_RS03000at 567.879 kb on - strand, within MMP_RS03000at 567.879 kb on - strand, within MMP_RS03000at 567.880 kb on + strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.884 kb on - strand, within MMP_RS03000at 567.884 kb on - strand, within MMP_RS03000at 567.885 kb on + strand, within MMP_RS03000at 567.885 kb on + strand, within MMP_RS03000at 567.909 kb on - strand, within MMP_RS03000at 567.924 kb on - strand, within MMP_RS03000at 567.950 kb on - strand, within MMP_RS03000at 567.951 kb on + strand, within MMP_RS03000at 567.951 kb on + strand, within MMP_RS03000at 567.954 kb on - strand, within MMP_RS03000at 567.955 kb on + strand, within MMP_RS03000at 567.955 kb on + strand, within MMP_RS03000at 568.019 kb on - strand, within MMP_RS03000at 568.100 kb on - strand, within MMP_RS03000at 568.101 kb on + strand, within MMP_RS03000at 568.285 kb on - strandat 568.386 kb on + strandat 568.424 kb on - strandat 568.437 kb on + strandat 568.440 kb on - strandat 568.570 kb on - strandat 568.602 kb on + strandat 568.766 kb on - strand, within MMP_RS03005at 568.766 kb on - strand, within MMP_RS03005at 568.770 kb on - strand, within MMP_RS03005at 568.862 kb on - strand, within MMP_RS03005at 568.862 kb on - strand, within MMP_RS03005at 568.890 kb on - strand, within MMP_RS03005at 568.944 kb on + strand, within MMP_RS03005at 568.957 kb on - strand, within MMP_RS03005at 568.959 kb on - strand, within MMP_RS03005at 568.959 kb on - strand, within MMP_RS03005at 568.983 kb on + strand, within MMP_RS03005at 569.091 kb on + strand, within MMP_RS03005at 569.219 kb on - strand, within MMP_RS03005at 569.219 kb on - strand, within MMP_RS03005at 569.225 kb on - strand, within MMP_RS03005at 569.261 kb on + strand, within MMP_RS03005at 569.316 kb on - strand, within MMP_RS03005at 569.320 kb on - strand, within MMP_RS03005at 569.365 kb on - strand, within MMP_RS03005at 569.367 kb on - strand, within MMP_RS03005at 569.368 kb on + strand, within MMP_RS03005at 569.370 kb on - strand, within MMP_RS03005at 569.370 kb on - strand, within MMP_RS03005at 569.371 kb on + strand, within MMP_RS03005at 569.442 kb on - strand, within MMP_RS03005at 569.484 kb on - strand, within MMP_RS03005at 569.485 kb on + strand, within MMP_RS03005at 569.498 kb on + strand, within MMP_RS03005at 569.505 kb on + strand, within MMP_RS03005at 569.580 kb on + strand, within MMP_RS03005at 569.617 kb on + strand, within MMP_RS03005at 569.617 kb on + strand, within MMP_RS03005at 569.617 kb on + strand, within MMP_RS03005at 569.617 kb on + strand, within MMP_RS03005at 569.731 kb on - strand, within MMP_RS03005at 569.731 kb on - strand, within MMP_RS03005at 570.001 kb on + strandat 570.060 kb on - strandat 570.061 kb on + strandat 570.064 kb on + strandat 570.064 kb on + strandat 570.068 kb on - strandat 570.078 kb on - strandat 570.079 kb on + strandat 570.083 kb on - strandat 570.083 kb on - strandat 570.113 kb on - strandat 570.135 kb on - strandat 570.139 kb on + strandat 570.139 kb on + strandat 570.142 kb on + strandat 570.164 kb on - strandat 570.361 kb on + strand, within MMP_RS03010at 570.410 kb on + strand, within MMP_RS03010at 570.414 kb on - strand, within MMP_RS03010at 570.415 kb on + strand, within MMP_RS03010at 570.416 kb on - strand, within MMP_RS03010at 570.436 kb on + strand, within MMP_RS03010at 570.439 kb on + strand, within MMP_RS03010at 570.445 kb on + strand, within MMP_RS03010at 570.448 kb on - strand, within MMP_RS03010at 570.449 kb on + strand, within MMP_RS03010at 570.449 kb on + strand, within MMP_RS03010at 570.468 kb on + strand, within MMP_RS03010at 570.524 kb on + strand, within MMP_RS03010at 570.534 kb on + strand, within MMP_RS03010at 570.544 kb on + strand, within MMP_RS03010at 570.548 kb on - strand, within MMP_RS03010at 570.567 kb on + strand, within MMP_RS03010at 570.567 kb on + strand, within MMP_RS03010at 570.577 kb on - strand, within MMP_RS03010at 570.820 kb on + strand, within MMP_RS03015at 570.836 kb on - strand, within MMP_RS03015at 570.915 kb on + strand, within MMP_RS03015at 570.950 kb on - strand, within MMP_RS03015at 570.951 kb on + strand, within MMP_RS03015at 570.954 kb on - strand, within MMP_RS03015at 570.954 kb on - strand, within MMP_RS03015at 570.954 kb on - strand, within MMP_RS03015at 570.955 kb on + strand, within MMP_RS03015at 570.955 kb on + strand, within MMP_RS03015at 570.955 kb on + strand, within MMP_RS03015at 571.002 kb on - strand, within MMP_RS03015at 571.003 kb on + strand, within MMP_RS03015

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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567,549 + MMP_RS02995 0.45 +1.0
567,578 - MMP_RS02995 0.52 +0.4
567,578 - MMP_RS02995 0.52 -1.5
567,641 + MMP_RS02995 0.67 -1.5
567,681 - MMP_RS02995 0.77 -5.7
567,718 - MMP_RS02995 0.86 +0.8
567,810 - +0.8
567,811 + +0.4
567,811 + -0.2
567,812 - -1.3
567,815 - -0.1
567,815 - -2.0
567,816 + +0.6
567,854 - MMP_RS03000 0.11 -1.5
567,855 + MMP_RS03000 0.11 -1.4
567,855 + MMP_RS03000 0.11 +0.8
567,869 - MMP_RS03000 0.13 -0.6
567,870 + MMP_RS03000 0.14 +1.0
567,879 - MMP_RS03000 0.15 -3.0
567,879 - MMP_RS03000 0.15 -1.5
567,880 + MMP_RS03000 0.15 +1.3
567,882 - MMP_RS03000 0.16 -0.3
567,882 - MMP_RS03000 0.16 -2.0
567,882 - MMP_RS03000 0.16 -0.9
567,883 + MMP_RS03000 0.16 +0.3
567,883 + MMP_RS03000 0.16 +0.2
567,883 + MMP_RS03000 0.16 +1.0
567,883 + MMP_RS03000 0.16 +0.3
567,884 - MMP_RS03000 0.16 +0.2
567,884 - MMP_RS03000 0.16 +0.6
567,885 + MMP_RS03000 0.16 +0.5
567,885 + MMP_RS03000 0.16 +0.3
567,909 - MMP_RS03000 0.21 +0.1
567,924 - MMP_RS03000 0.24 +0.7
567,950 - MMP_RS03000 0.28 +0.0
567,951 + MMP_RS03000 0.29 -1.8
567,951 + MMP_RS03000 0.29 -0.5
567,954 - MMP_RS03000 0.29 -1.0
567,955 + MMP_RS03000 0.29 +0.3
567,955 + MMP_RS03000 0.29 -3.0
568,019 - MMP_RS03000 0.41 -0.7
568,100 - MMP_RS03000 0.56 +1.4
568,101 + MMP_RS03000 0.56 +2.2
568,285 - +0.3
568,386 + -0.0
568,424 - -0.8
568,437 + +0.0
568,440 - -0.7
568,570 - -0.4
568,602 + +0.7
568,766 - MMP_RS03005 0.15 +0.7
568,766 - MMP_RS03005 0.15 -0.7
568,770 - MMP_RS03005 0.15 +1.1
568,862 - MMP_RS03005 0.21 +0.3
568,862 - MMP_RS03005 0.21 -1.0
568,890 - MMP_RS03005 0.23 -5.1
568,944 + MMP_RS03005 0.26 -0.9
568,957 - MMP_RS03005 0.27 -0.4
568,959 - MMP_RS03005 0.27 -0.2
568,959 - MMP_RS03005 0.27 +1.2
568,983 + MMP_RS03005 0.29 -0.2
569,091 + MMP_RS03005 0.36 -1.8
569,219 - MMP_RS03005 0.44 +1.6
569,219 - MMP_RS03005 0.44 +1.4
569,225 - MMP_RS03005 0.44 +3.8
569,261 + MMP_RS03005 0.46 -1.5
569,316 - MMP_RS03005 0.50 -1.8
569,320 - MMP_RS03005 0.50 -0.3
569,365 - MMP_RS03005 0.53 -0.0
569,367 - MMP_RS03005 0.53 +0.9
569,368 + MMP_RS03005 0.53 +0.6
569,370 - MMP_RS03005 0.53 -0.1
569,370 - MMP_RS03005 0.53 +0.2
569,371 + MMP_RS03005 0.53 -0.5
569,442 - MMP_RS03005 0.58 +0.9
569,484 - MMP_RS03005 0.60 -1.6
569,485 + MMP_RS03005 0.60 +1.7
569,498 + MMP_RS03005 0.61 -0.2
569,505 + MMP_RS03005 0.62 -1.3
569,580 + MMP_RS03005 0.66 +0.7
569,617 + MMP_RS03005 0.69 -0.5
569,617 + MMP_RS03005 0.69 +0.5
569,617 + MMP_RS03005 0.69 +0.3
569,617 + MMP_RS03005 0.69 +0.4
569,731 - MMP_RS03005 0.76 -0.6
569,731 - MMP_RS03005 0.76 +0.8
570,001 + +1.6
570,060 - -1.2
570,061 + -2.9
570,064 + +0.8
570,064 + -0.1
570,068 - -2.0
570,078 - +0.9
570,079 + -1.9
570,083 - +0.7
570,083 - +0.6
570,113 - +0.9
570,135 - +1.0
570,139 + +0.4
570,139 + +1.0
570,142 + -0.8
570,164 - -1.6
570,361 + MMP_RS03010 0.35 +2.3
570,410 + MMP_RS03010 0.45 +0.5
570,414 - MMP_RS03010 0.45 +1.0
570,415 + MMP_RS03010 0.46 +0.4
570,416 - MMP_RS03010 0.46 +0.8
570,436 + MMP_RS03010 0.50 +0.3
570,439 + MMP_RS03010 0.50 -2.7
570,445 + MMP_RS03010 0.51 +0.2
570,448 - MMP_RS03010 0.52 +1.2
570,449 + MMP_RS03010 0.52 +1.1
570,449 + MMP_RS03010 0.52 +1.3
570,468 + MMP_RS03010 0.56 +0.9
570,524 + MMP_RS03010 0.67 +0.9
570,534 + MMP_RS03010 0.69 +1.1
570,544 + MMP_RS03010 0.71 +0.4
570,548 - MMP_RS03010 0.72 -0.7
570,567 + MMP_RS03010 0.76 +1.5
570,567 + MMP_RS03010 0.76 -0.2
570,577 - MMP_RS03010 0.78 +2.2
570,820 + MMP_RS03015 0.14 -0.4
570,836 - MMP_RS03015 0.16 +1.2
570,915 + MMP_RS03015 0.24 -0.1
570,950 - MMP_RS03015 0.28 +0.4
570,951 + MMP_RS03015 0.29 -0.7
570,954 - MMP_RS03015 0.29 +0.6
570,954 - MMP_RS03015 0.29 +0.6
570,954 - MMP_RS03015 0.29 -0.1
570,955 + MMP_RS03015 0.29 -1.5
570,955 + MMP_RS03015 0.29 +0.0
570,955 + MMP_RS03015 0.29 +0.2
571,002 - MMP_RS03015 0.34 +0.8
571,003 + MMP_RS03015 0.34 -1.0

Or see this region's nucleotide sequence