Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02925 and MMP_RS02930 are separated by 123 nucleotides MMP_RS02930 and MMP_RS02935 are separated by 43 nucleotides MMP_RS02935 and MMP_RS02940 overlap by 4 nucleotides MMP_RS02940 and MMP_RS02945 are separated by 1 nucleotides
MMP_RS02925: MMP_RS02925 - ornithine carbamoyltransferase, at 556,641 to 557,555
_RS02925
MMP_RS02930: MMP_RS02930 - class I SAM-dependent methyltransferase, at 557,679 to 558,281
_RS02930
MMP_RS02935: MMP_RS02935 - A24 family peptidase, at 558,325 to 559,017
_RS02935
MMP_RS02940: MMP_RS02940 - TatD family hydrolase, at 559,014 to 559,856
_RS02940
MMP_RS02945: MMP_RS02945 - UPF0146 family protein, at 559,858 to 560,271
_RS02945
Position (kb) 558
559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 557.383 kb on + strand at 557.547 kb on - strand at 557.593 kb on + strand at 557.617 kb on - strand at 557.618 kb on + strand at 557.624 kb on - strand at 557.631 kb on + strand at 557.636 kb on + strand at 557.658 kb on + strand at 557.658 kb on + strand at 557.762 kb on - strand, within MMP_RS02930 at 557.996 kb on - strand, within MMP_RS02930 at 558.073 kb on - strand, within MMP_RS02930 at 558.192 kb on - strand, within MMP_RS02930 at 558.227 kb on - strand at 558.290 kb on - strand at 558.301 kb on - strand at 558.302 kb on + strand at 558.334 kb on - strand at 558.334 kb on - strand at 558.460 kb on + strand, within MMP_RS02935 at 558.616 kb on - strand, within MMP_RS02935 at 558.649 kb on - strand, within MMP_RS02935 at 558.962 kb on + strand at 558.962 kb on + strand at 558.965 kb on - strand at 558.966 kb on + strand at 558.966 kb on + strand at 558.969 kb on + strand at 558.992 kb on - strand at 559.221 kb on - strand, within MMP_RS02940 at 559.272 kb on - strand, within MMP_RS02940 at 559.324 kb on + strand, within MMP_RS02940 at 559.426 kb on - strand, within MMP_RS02940 at 559.554 kb on - strand, within MMP_RS02940 at 559.555 kb on + strand, within MMP_RS02940 at 559.555 kb on + strand, within MMP_RS02940 at 559.562 kb on + strand, within MMP_RS02940 at 559.735 kb on + strand, within MMP_RS02940 at 559.877 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 557,383 + -1.0 557,547 - -1.3 557,593 + -1.8 557,617 - -3.6 557,618 + -2.3 557,624 - -3.6 557,631 + -3.1 557,636 + +1.0 557,658 + +1.0 557,658 + +0.0 557,762 - MMP_RS02930 0.14 -3.0 557,996 - MMP_RS02930 0.53 -0.1 558,073 - MMP_RS02930 0.65 -2.5 558,192 - MMP_RS02930 0.85 +1.1 558,227 - +0.8 558,290 - -0.4 558,301 - -2.3 558,302 + -0.2 558,334 - -0.7 558,334 - -1.4 558,460 + MMP_RS02935 0.19 -0.5 558,616 - MMP_RS02935 0.42 -1.9 558,649 - MMP_RS02935 0.47 -1.3 558,962 + -1.2 558,962 + -1.8 558,965 - -0.0 558,966 + -0.3 558,966 + -1.7 558,969 + -2.0 558,992 - +0.0 559,221 - MMP_RS02940 0.25 -0.7 559,272 - MMP_RS02940 0.31 +1.5 559,324 + MMP_RS02940 0.37 -2.8 559,426 - MMP_RS02940 0.49 -0.2 559,554 - MMP_RS02940 0.64 +0.2 559,555 + MMP_RS02940 0.64 -1.8 559,555 + MMP_RS02940 0.64 +0.3 559,562 + MMP_RS02940 0.65 +0.0 559,735 + MMP_RS02940 0.86 +0.6 559,877 - -1.5
Or see this region's nucleotide sequence