Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02825 and MMP_RS02830 are separated by 0 nucleotides MMP_RS02830 and MMP_RS02835 are separated by 148 nucleotides MMP_RS02835 and MMP_RS02840 are separated by 23 nucleotides
MMP_RS02825: MMP_RS02825 - mechanosensitive ion channel family protein, at 539,194 to 540,276
_RS02825
MMP_RS02830: MMP_RS02830 - DUF432 domain-containing protein, at 540,277 to 540,915
_RS02830
MMP_RS02835: MMP_RS02835 - CGGC domain-containing protein, at 541,064 to 541,477
_RS02835
MMP_RS02840: MMP_RS02840 - DUF123 domain-containing protein, at 541,501 to 542,571
_RS02840
Position (kb) 540
541 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 539.376 kb on - strand, within MMP_RS02825 at 539.405 kb on + strand, within MMP_RS02825 at 539.431 kb on - strand, within MMP_RS02825 at 539.435 kb on + strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.439 kb on + strand, within MMP_RS02825 at 539.445 kb on - strand, within MMP_RS02825 at 539.456 kb on + strand, within MMP_RS02825 at 539.614 kb on + strand, within MMP_RS02825 at 539.724 kb on - strand, within MMP_RS02825 at 539.725 kb on + strand, within MMP_RS02825 at 539.766 kb on - strand, within MMP_RS02825 at 539.930 kb on - strand, within MMP_RS02825 at 539.931 kb on + strand, within MMP_RS02825 at 539.967 kb on + strand, within MMP_RS02825 at 540.013 kb on - strand, within MMP_RS02825 at 540.020 kb on - strand, within MMP_RS02825 at 540.021 kb on + strand, within MMP_RS02825 at 540.393 kb on - strand, within MMP_RS02830 at 540.538 kb on + strand, within MMP_RS02830 at 540.541 kb on - strand, within MMP_RS02830 at 540.542 kb on + strand, within MMP_RS02830 at 540.574 kb on - strand, within MMP_RS02830 at 540.575 kb on + strand, within MMP_RS02830 at 540.575 kb on + strand, within MMP_RS02830 at 540.629 kb on + strand, within MMP_RS02830 at 540.649 kb on - strand, within MMP_RS02830 at 540.678 kb on + strand, within MMP_RS02830 at 540.827 kb on - strand, within MMP_RS02830 at 540.915 kb on - strand at 540.919 kb on + strand at 540.921 kb on - strand at 540.922 kb on + strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.926 kb on + strand at 540.972 kb on + strand at 541.175 kb on + strand, within MMP_RS02835 at 541.222 kb on - strand, within MMP_RS02835 at 541.238 kb on - strand, within MMP_RS02835 at 541.350 kb on - strand, within MMP_RS02835 at 541.454 kb on - strand at 541.456 kb on - strand at 541.456 kb on - strand at 541.457 kb on + strand at 541.460 kb on - strand at 541.519 kb on - strand at 541.654 kb on - strand, within MMP_RS02840 at 541.835 kb on - strand, within MMP_RS02840 at 541.836 kb on + strand, within MMP_RS02840
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 539,376 - MMP_RS02825 0.17 +1.1 539,405 + MMP_RS02825 0.19 -0.5 539,431 - MMP_RS02825 0.22 +1.0 539,435 + MMP_RS02825 0.22 +0.6 539,438 - MMP_RS02825 0.23 +1.3 539,438 - MMP_RS02825 0.23 -0.4 539,438 - MMP_RS02825 0.23 +0.6 539,438 - MMP_RS02825 0.23 -1.8 539,438 - MMP_RS02825 0.23 +0.9 539,439 + MMP_RS02825 0.23 -0.9 539,445 - MMP_RS02825 0.23 -0.6 539,456 + MMP_RS02825 0.24 +0.6 539,614 + MMP_RS02825 0.39 -0.9 539,724 - MMP_RS02825 0.49 +1.5 539,725 + MMP_RS02825 0.49 +0.4 539,766 - MMP_RS02825 0.53 -0.4 539,930 - MMP_RS02825 0.68 +1.1 539,931 + MMP_RS02825 0.68 +0.7 539,967 + MMP_RS02825 0.71 +0.9 540,013 - MMP_RS02825 0.76 -0.6 540,020 - MMP_RS02825 0.76 -1.3 540,021 + MMP_RS02825 0.76 +0.4 540,393 - MMP_RS02830 0.18 +0.3 540,538 + MMP_RS02830 0.41 +0.6 540,541 - MMP_RS02830 0.41 -0.5 540,542 + MMP_RS02830 0.41 +0.4 540,574 - MMP_RS02830 0.46 -0.8 540,575 + MMP_RS02830 0.47 -3.0 540,575 + MMP_RS02830 0.47 -1.2 540,629 + MMP_RS02830 0.55 +0.9 540,649 - MMP_RS02830 0.58 +0.6 540,678 + MMP_RS02830 0.63 +1.8 540,827 - MMP_RS02830 0.86 -4.5 540,915 - +0.4 540,919 + -1.9 540,921 - -0.4 540,922 + -3.5 540,923 - +0.4 540,923 - -1.8 540,923 - +1.9 540,923 - +1.5 540,923 - +0.6 540,925 - +1.2 540,925 - -0.1 540,925 - +1.3 540,925 - +0.8 540,926 + -1.0 540,972 + -1.1 541,175 + MMP_RS02835 0.27 -0.8 541,222 - MMP_RS02835 0.38 +0.7 541,238 - MMP_RS02835 0.42 +3.9 541,350 - MMP_RS02835 0.69 -0.0 541,454 - +1.3 541,456 - +1.8 541,456 - +1.7 541,457 + +2.2 541,460 - +1.6 541,519 - -0.1 541,654 - MMP_RS02840 0.14 +0.9 541,835 - MMP_RS02840 0.31 -3.2 541,836 + MMP_RS02840 0.31 +3.1
Or see this region's nucleotide sequence