Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02710

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02705 and MMP_RS02710 are separated by 118 nucleotidesMMP_RS02710 and MMP_RS02715 are separated by 76 nucleotides MMP_RS02705: MMP_RS02705 - formylmethanofuran dehydrogenase subunit B, at 515,910 to 517,241 _RS02705 MMP_RS02710: MMP_RS02710 - formylmethanofuran dehydrogenase subunit B, at 517,360 to 518,697 _RS02710 MMP_RS02715: MMP_RS02715 - molybdopterin molybdotransferase MoeA, at 518,774 to 519,895 _RS02715 Position (kb) 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 516.466 kb on - strand, within MMP_RS02705at 516.579 kb on + strand, within MMP_RS02705at 516.644 kb on + strand, within MMP_RS02705at 516.763 kb on + strand, within MMP_RS02705at 516.879 kb on + strand, within MMP_RS02705at 517.013 kb on + strand, within MMP_RS02705at 517.067 kb on + strand, within MMP_RS02705at 517.079 kb on + strand, within MMP_RS02705at 517.100 kb on - strand, within MMP_RS02705at 517.130 kb on + strandat 517.131 kb on - strandat 517.132 kb on + strandat 517.132 kb on + strandat 517.132 kb on + strandat 517.132 kb on + strandat 517.132 kb on + strandat 517.134 kb on - strandat 517.134 kb on - strandat 517.134 kb on - strandat 517.135 kb on + strandat 517.210 kb on - strandat 517.239 kb on - strandat 517.282 kb on + strandat 517.337 kb on - strandat 517.338 kb on + strandat 517.378 kb on + strandat 517.385 kb on - strandat 517.385 kb on - strandat 517.385 kb on - strandat 517.386 kb on + strandat 517.386 kb on + strandat 517.388 kb on - strandat 517.389 kb on + strandat 517.389 kb on + strandat 517.389 kb on + strandat 517.433 kb on + strandat 517.433 kb on + strandat 517.433 kb on + strandat 517.453 kb on + strandat 517.506 kb on + strand, within MMP_RS02710at 517.509 kb on - strand, within MMP_RS02710at 517.518 kb on - strand, within MMP_RS02710at 517.520 kb on - strand, within MMP_RS02710at 517.541 kb on - strand, within MMP_RS02710at 517.802 kb on - strand, within MMP_RS02710at 517.803 kb on + strand, within MMP_RS02710at 517.806 kb on - strand, within MMP_RS02710at 517.859 kb on + strand, within MMP_RS02710at 517.962 kb on + strand, within MMP_RS02710at 517.973 kb on - strand, within MMP_RS02710at 518.065 kb on + strand, within MMP_RS02710at 518.205 kb on + strand, within MMP_RS02710at 518.333 kb on + strand, within MMP_RS02710at 518.333 kb on + strand, within MMP_RS02710at 518.397 kb on + strand, within MMP_RS02710at 518.439 kb on - strand, within MMP_RS02710at 518.443 kb on - strand, within MMP_RS02710at 518.443 kb on - strand, within MMP_RS02710at 518.446 kb on + strand, within MMP_RS02710at 518.580 kb on + strandat 518.582 kb on + strandat 518.582 kb on + strandat 518.635 kb on + strandat 518.712 kb on + strandat 518.721 kb on - strandat 518.721 kb on - strandat 518.726 kb on - strandat 518.781 kb on - strandat 518.782 kb on + strandat 519.010 kb on - strand, within MMP_RS02715at 519.010 kb on - strand, within MMP_RS02715at 519.018 kb on + strand, within MMP_RS02715at 519.037 kb on + strand, within MMP_RS02715at 519.049 kb on - strand, within MMP_RS02715at 519.077 kb on - strand, within MMP_RS02715at 519.077 kb on - strand, within MMP_RS02715at 519.078 kb on + strand, within MMP_RS02715at 519.080 kb on + strand, within MMP_RS02715at 519.080 kb on + strand, within MMP_RS02715at 519.386 kb on - strand, within MMP_RS02715at 519.410 kb on - strand, within MMP_RS02715at 519.468 kb on + strand, within MMP_RS02715at 519.468 kb on + strand, within MMP_RS02715at 519.532 kb on - strand, within MMP_RS02715at 519.593 kb on - strand, within MMP_RS02715at 519.593 kb on - strand, within MMP_RS02715

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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516,466 - MMP_RS02705 0.42 -0.2
516,579 + MMP_RS02705 0.50 +0.8
516,644 + MMP_RS02705 0.55 -0.6
516,763 + MMP_RS02705 0.64 -0.9
516,879 + MMP_RS02705 0.73 -0.1
517,013 + MMP_RS02705 0.83 -1.4
517,067 + MMP_RS02705 0.87 +0.6
517,079 + MMP_RS02705 0.88 +2.6
517,100 - MMP_RS02705 0.89 -0.1
517,130 + -2.2
517,131 - -0.5
517,132 + +0.3
517,132 + +0.1
517,132 + -0.1
517,132 + -0.3
517,132 + +0.3
517,134 - +0.3
517,134 - -0.5
517,134 - -1.4
517,135 + +0.4
517,210 - -1.1
517,239 - +0.3
517,282 + +0.0
517,337 - -1.4
517,338 + -0.1
517,378 + +0.2
517,385 - +2.1
517,385 - +0.6
517,385 - -0.1
517,386 + -1.4
517,386 + +0.3
517,388 - -1.7
517,389 + +0.1
517,389 + +0.4
517,389 + -1.8
517,433 + -0.7
517,433 + +0.5
517,433 + -0.7
517,453 + +1.2
517,506 + MMP_RS02710 0.11 -3.4
517,509 - MMP_RS02710 0.11 +0.9
517,518 - MMP_RS02710 0.12 -1.6
517,520 - MMP_RS02710 0.12 -1.4
517,541 - MMP_RS02710 0.14 +0.8
517,802 - MMP_RS02710 0.33 +1.0
517,803 + MMP_RS02710 0.33 +0.8
517,806 - MMP_RS02710 0.33 +1.2
517,859 + MMP_RS02710 0.37 -0.5
517,962 + MMP_RS02710 0.45 +1.4
517,973 - MMP_RS02710 0.46 -1.7
518,065 + MMP_RS02710 0.53 -0.3
518,205 + MMP_RS02710 0.63 +1.5
518,333 + MMP_RS02710 0.73 +0.7
518,333 + MMP_RS02710 0.73 -2.4
518,397 + MMP_RS02710 0.78 +2.0
518,439 - MMP_RS02710 0.81 -2.3
518,443 - MMP_RS02710 0.81 -0.4
518,443 - MMP_RS02710 0.81 -0.6
518,446 + MMP_RS02710 0.81 +0.6
518,580 + -2.4
518,582 + +0.6
518,582 + +0.0
518,635 + +1.1
518,712 + +1.0
518,721 - +0.0
518,721 - +0.1
518,726 - +1.1
518,781 - -1.7
518,782 + -0.6
519,010 - MMP_RS02715 0.21 +2.0
519,010 - MMP_RS02715 0.21 +1.3
519,018 + MMP_RS02715 0.22 +1.1
519,037 + MMP_RS02715 0.23 -1.4
519,049 - MMP_RS02715 0.25 -0.6
519,077 - MMP_RS02715 0.27 -0.6
519,077 - MMP_RS02715 0.27 -1.4
519,078 + MMP_RS02715 0.27 +0.6
519,080 + MMP_RS02715 0.27 +2.1
519,080 + MMP_RS02715 0.27 -1.3
519,386 - MMP_RS02715 0.55 +0.2
519,410 - MMP_RS02715 0.57 +0.1
519,468 + MMP_RS02715 0.62 -0.9
519,468 + MMP_RS02715 0.62 +0.9
519,532 - MMP_RS02715 0.68 -0.7
519,593 - MMP_RS02715 0.73 -0.3
519,593 - MMP_RS02715 0.73 +1.6

Or see this region's nucleotide sequence