Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02700 and MMP_RS02705 are separated by 5 nucleotides MMP_RS02705 and MMP_RS02710 are separated by 118 nucleotides
MMP_RS02700: MMP_RS02700 - formylmethanofuran dehydrogenase subunit C, at 514,657 to 515,904
_RS02700
MMP_RS02705: MMP_RS02705 - formylmethanofuran dehydrogenase subunit B, at 515,910 to 517,241
_RS02705
MMP_RS02710: MMP_RS02710 - formylmethanofuran dehydrogenase subunit B, at 517,360 to 518,697
_RS02710
Position (kb) 515
516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 515.227 kb on - strand, within MMP_RS02700 at 515.285 kb on - strand, within MMP_RS02700 at 515.347 kb on - strand, within MMP_RS02700 at 515.348 kb on + strand, within MMP_RS02700 at 515.533 kb on + strand, within MMP_RS02700 at 515.590 kb on - strand, within MMP_RS02700 at 515.607 kb on + strand, within MMP_RS02700 at 515.625 kb on - strand, within MMP_RS02700 at 515.783 kb on - strand at 516.023 kb on - strand at 516.023 kb on - strand at 516.113 kb on + strand, within MMP_RS02705 at 516.213 kb on + strand, within MMP_RS02705 at 516.234 kb on - strand, within MMP_RS02705 at 516.234 kb on - strand, within MMP_RS02705 at 516.234 kb on - strand, within MMP_RS02705 at 516.466 kb on - strand, within MMP_RS02705 at 516.579 kb on + strand, within MMP_RS02705 at 516.644 kb on + strand, within MMP_RS02705 at 516.763 kb on + strand, within MMP_RS02705 at 516.879 kb on + strand, within MMP_RS02705 at 517.013 kb on + strand, within MMP_RS02705 at 517.067 kb on + strand, within MMP_RS02705 at 517.079 kb on + strand, within MMP_RS02705 at 517.100 kb on - strand, within MMP_RS02705 at 517.130 kb on + strand at 517.131 kb on - strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.134 kb on - strand at 517.134 kb on - strand at 517.134 kb on - strand at 517.135 kb on + strand at 517.210 kb on - strand at 517.239 kb on - strand at 517.282 kb on + strand at 517.337 kb on - strand at 517.338 kb on + strand at 517.378 kb on + strand at 517.385 kb on - strand at 517.385 kb on - strand at 517.385 kb on - strand at 517.386 kb on + strand at 517.386 kb on + strand at 517.388 kb on - strand at 517.389 kb on + strand at 517.389 kb on + strand at 517.389 kb on + strand at 517.433 kb on + strand at 517.433 kb on + strand at 517.433 kb on + strand at 517.453 kb on + strand at 517.506 kb on + strand, within MMP_RS02710 at 517.509 kb on - strand, within MMP_RS02710 at 517.518 kb on - strand, within MMP_RS02710 at 517.520 kb on - strand, within MMP_RS02710 at 517.541 kb on - strand, within MMP_RS02710 at 517.802 kb on - strand, within MMP_RS02710 at 517.803 kb on + strand, within MMP_RS02710 at 517.806 kb on - strand, within MMP_RS02710 at 517.859 kb on + strand, within MMP_RS02710 at 517.962 kb on + strand, within MMP_RS02710 at 517.973 kb on - strand, within MMP_RS02710 at 518.065 kb on + strand, within MMP_RS02710 at 518.205 kb on + strand, within MMP_RS02710
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 515,227 - MMP_RS02700 0.46 -0.4 515,285 - MMP_RS02700 0.50 -1.3 515,347 - MMP_RS02700 0.55 +0.7 515,348 + MMP_RS02700 0.55 -0.7 515,533 + MMP_RS02700 0.70 -2.7 515,590 - MMP_RS02700 0.75 -0.1 515,607 + MMP_RS02700 0.76 -1.3 515,625 - MMP_RS02700 0.78 +3.4 515,783 - -1.1 516,023 - -0.1 516,023 - +1.1 516,113 + MMP_RS02705 0.15 -1.4 516,213 + MMP_RS02705 0.23 -2.3 516,234 - MMP_RS02705 0.24 -0.8 516,234 - MMP_RS02705 0.24 -1.8 516,234 - MMP_RS02705 0.24 -1.6 516,466 - MMP_RS02705 0.42 -0.2 516,579 + MMP_RS02705 0.50 +0.8 516,644 + MMP_RS02705 0.55 -0.6 516,763 + MMP_RS02705 0.64 -0.9 516,879 + MMP_RS02705 0.73 -0.1 517,013 + MMP_RS02705 0.83 -1.4 517,067 + MMP_RS02705 0.87 +0.6 517,079 + MMP_RS02705 0.88 +2.6 517,100 - MMP_RS02705 0.89 -0.1 517,130 + -2.2 517,131 - -0.5 517,132 + +0.3 517,132 + +0.1 517,132 + -0.1 517,132 + -0.3 517,132 + +0.3 517,134 - +0.3 517,134 - -0.5 517,134 - -1.4 517,135 + +0.4 517,210 - -1.1 517,239 - +0.3 517,282 + +0.0 517,337 - -1.4 517,338 + -0.1 517,378 + +0.2 517,385 - +2.1 517,385 - +0.6 517,385 - -0.1 517,386 + -1.4 517,386 + +0.3 517,388 - -1.7 517,389 + +0.1 517,389 + +0.4 517,389 + -1.8 517,433 + -0.7 517,433 + +0.5 517,433 + -0.7 517,453 + +1.2 517,506 + MMP_RS02710 0.11 -3.4 517,509 - MMP_RS02710 0.11 +0.9 517,518 - MMP_RS02710 0.12 -1.6 517,520 - MMP_RS02710 0.12 -1.4 517,541 - MMP_RS02710 0.14 +0.8 517,802 - MMP_RS02710 0.33 +1.0 517,803 + MMP_RS02710 0.33 +0.8 517,806 - MMP_RS02710 0.33 +1.2 517,859 + MMP_RS02710 0.37 -0.5 517,962 + MMP_RS02710 0.45 +1.4 517,973 - MMP_RS02710 0.46 -1.7 518,065 + MMP_RS02710 0.53 -0.3 518,205 + MMP_RS02710 0.63 +1.5
Or see this region's nucleotide sequence