Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02690 and MMP_RS02695 are separated by 43 nucleotides MMP_RS02695 and MMP_RS02700 are separated by 9 nucleotides
MMP_RS02690: MMP_RS02690 - FmdE family protein, at 512,277 to 512,852
_RS02690
MMP_RS02695: MMP_RS02695 - formylmethanofuran dehydrogenase subunit A, at 512,896 to 514,647
_RS02695
MMP_RS02700: MMP_RS02700 - formylmethanofuran dehydrogenase subunit C, at 514,657 to 515,904
_RS02700
Position (kb) 512
513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 511.989 kb on - strand at 512.139 kb on - strand at 512.140 kb on + strand at 512.191 kb on + strand at 512.194 kb on - strand at 512.194 kb on - strand at 512.195 kb on + strand at 512.250 kb on - strand at 512.251 kb on + strand at 512.262 kb on - strand at 512.263 kb on + strand at 512.275 kb on + strand at 512.275 kb on + strand at 512.275 kb on + strand at 512.282 kb on - strand at 512.344 kb on - strand, within MMP_RS02690 at 512.400 kb on + strand, within MMP_RS02690 at 512.611 kb on - strand, within MMP_RS02690 at 512.634 kb on - strand, within MMP_RS02690 at 512.675 kb on + strand, within MMP_RS02690 at 512.682 kb on + strand, within MMP_RS02690 at 512.724 kb on - strand, within MMP_RS02690 at 512.749 kb on - strand, within MMP_RS02690 at 512.878 kb on - strand at 512.911 kb on + strand at 512.912 kb on - strand at 512.939 kb on - strand at 512.939 kb on - strand at 512.940 kb on + strand at 512.960 kb on - strand at 513.018 kb on + strand at 513.042 kb on + strand at 513.139 kb on - strand, within MMP_RS02695 at 513.371 kb on - strand, within MMP_RS02695 at 513.442 kb on + strand, within MMP_RS02695 at 513.445 kb on + strand, within MMP_RS02695 at 513.832 kb on - strand, within MMP_RS02695 at 513.891 kb on - strand, within MMP_RS02695 at 514.006 kb on - strand, within MMP_RS02695 at 514.357 kb on + strand, within MMP_RS02695 at 514.358 kb on - strand, within MMP_RS02695 at 514.358 kb on - strand, within MMP_RS02695 at 514.359 kb on + strand, within MMP_RS02695 at 514.370 kb on + strand, within MMP_RS02695 at 514.490 kb on + strand at 514.492 kb on - strand at 514.521 kb on + strand at 514.534 kb on + strand at 514.565 kb on + strand at 514.605 kb on + strand at 514.675 kb on + strand at 514.692 kb on - strand at 514.716 kb on + strand at 514.830 kb on - strand, within MMP_RS02700 at 515.227 kb on - strand, within MMP_RS02700 at 515.285 kb on - strand, within MMP_RS02700 at 515.347 kb on - strand, within MMP_RS02700 at 515.348 kb on + strand, within MMP_RS02700 at 515.533 kb on + strand, within MMP_RS02700 at 515.590 kb on - strand, within MMP_RS02700 at 515.607 kb on + strand, within MMP_RS02700 at 515.625 kb on - strand, within MMP_RS02700
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 511,989 - +1.2 512,139 - +0.4 512,140 + -0.4 512,191 + +0.9 512,194 - -0.1 512,194 - -1.3 512,195 + +1.0 512,250 - -0.8 512,251 + -0.9 512,262 - -3.4 512,263 + -0.9 512,275 + -0.5 512,275 + +0.5 512,275 + -3.2 512,282 - +0.8 512,344 - MMP_RS02690 0.12 -0.2 512,400 + MMP_RS02690 0.21 -0.4 512,611 - MMP_RS02690 0.58 -0.5 512,634 - MMP_RS02690 0.62 -1.0 512,675 + MMP_RS02690 0.69 -0.7 512,682 + MMP_RS02690 0.70 -0.1 512,724 - MMP_RS02690 0.78 +0.2 512,749 - MMP_RS02690 0.82 -0.6 512,878 - -0.5 512,911 + +1.2 512,912 - -2.5 512,939 - -1.3 512,939 - -1.2 512,940 + +0.4 512,960 - +1.3 513,018 + +0.2 513,042 + +0.1 513,139 - MMP_RS02695 0.14 -3.4 513,371 - MMP_RS02695 0.27 +0.8 513,442 + MMP_RS02695 0.31 -0.6 513,445 + MMP_RS02695 0.31 -1.6 513,832 - MMP_RS02695 0.53 -1.7 513,891 - MMP_RS02695 0.57 -1.5 514,006 - MMP_RS02695 0.63 -1.4 514,357 + MMP_RS02695 0.83 -0.4 514,358 - MMP_RS02695 0.83 -2.7 514,358 - MMP_RS02695 0.83 +0.9 514,359 + MMP_RS02695 0.84 +0.1 514,370 + MMP_RS02695 0.84 -1.2 514,490 + -0.5 514,492 - -0.6 514,521 + -0.6 514,534 + +0.7 514,565 + +0.9 514,605 + -0.3 514,675 + -0.7 514,692 - +0.8 514,716 + -1.0 514,830 - MMP_RS02700 0.14 +0.8 515,227 - MMP_RS02700 0.46 -0.4 515,285 - MMP_RS02700 0.50 -1.3 515,347 - MMP_RS02700 0.55 +0.7 515,348 + MMP_RS02700 0.55 -0.7 515,533 + MMP_RS02700 0.70 -2.7 515,590 - MMP_RS02700 0.75 -0.1 515,607 + MMP_RS02700 0.76 -1.3 515,625 - MMP_RS02700 0.78 +3.4
Or see this region's nucleotide sequence