Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02685 and MMP_RS02690 are separated by 586 nucleotides MMP_RS02690 and MMP_RS02695 are separated by 43 nucleotides
MMP_RS02685: MMP_RS02685 - molybdate ABC transporter substrate-binding protein, at 510,908 to 511,690
_RS02685
MMP_RS02690: MMP_RS02690 - FmdE family protein, at 512,277 to 512,852
_RS02690
MMP_RS02695: MMP_RS02695 - formylmethanofuran dehydrogenase subunit A, at 512,896 to 514,647
_RS02695
Position (kb) 512
513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 511.403 kb on + strand, within MMP_RS02685 at 511.445 kb on - strand, within MMP_RS02685 at 511.446 kb on + strand, within MMP_RS02685 at 511.584 kb on - strand, within MMP_RS02685 at 511.585 kb on + strand, within MMP_RS02685 at 511.593 kb on + strand, within MMP_RS02685 at 511.596 kb on + strand, within MMP_RS02685 at 511.596 kb on + strand, within MMP_RS02685 at 511.781 kb on - strand at 511.782 kb on + strand at 511.782 kb on + strand at 511.785 kb on - strand at 511.989 kb on - strand at 512.139 kb on - strand at 512.140 kb on + strand at 512.191 kb on + strand at 512.194 kb on - strand at 512.194 kb on - strand at 512.195 kb on + strand at 512.250 kb on - strand at 512.251 kb on + strand at 512.262 kb on - strand at 512.263 kb on + strand at 512.275 kb on + strand at 512.275 kb on + strand at 512.275 kb on + strand at 512.282 kb on - strand at 512.344 kb on - strand, within MMP_RS02690 at 512.400 kb on + strand, within MMP_RS02690 at 512.611 kb on - strand, within MMP_RS02690 at 512.634 kb on - strand, within MMP_RS02690 at 512.675 kb on + strand, within MMP_RS02690 at 512.682 kb on + strand, within MMP_RS02690 at 512.724 kb on - strand, within MMP_RS02690 at 512.749 kb on - strand, within MMP_RS02690 at 512.878 kb on - strand at 512.911 kb on + strand at 512.912 kb on - strand at 512.939 kb on - strand at 512.939 kb on - strand at 512.940 kb on + strand at 512.960 kb on - strand at 513.018 kb on + strand at 513.042 kb on + strand at 513.139 kb on - strand, within MMP_RS02695 at 513.371 kb on - strand, within MMP_RS02695 at 513.442 kb on + strand, within MMP_RS02695 at 513.445 kb on + strand, within MMP_RS02695 at 513.832 kb on - strand, within MMP_RS02695
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 511,403 + MMP_RS02685 0.63 +0.7 511,445 - MMP_RS02685 0.69 +0.3 511,446 + MMP_RS02685 0.69 -0.4 511,584 - MMP_RS02685 0.86 +0.9 511,585 + MMP_RS02685 0.86 -1.0 511,593 + MMP_RS02685 0.87 +0.9 511,596 + MMP_RS02685 0.88 +0.4 511,596 + MMP_RS02685 0.88 -0.8 511,781 - +0.0 511,782 + +2.1 511,782 + -1.3 511,785 - +0.3 511,989 - +1.2 512,139 - +0.4 512,140 + -0.4 512,191 + +0.9 512,194 - -0.1 512,194 - -1.3 512,195 + +1.0 512,250 - -0.8 512,251 + -0.9 512,262 - -3.4 512,263 + -0.9 512,275 + -0.5 512,275 + +0.5 512,275 + -3.2 512,282 - +0.8 512,344 - MMP_RS02690 0.12 -0.2 512,400 + MMP_RS02690 0.21 -0.4 512,611 - MMP_RS02690 0.58 -0.5 512,634 - MMP_RS02690 0.62 -1.0 512,675 + MMP_RS02690 0.69 -0.7 512,682 + MMP_RS02690 0.70 -0.1 512,724 - MMP_RS02690 0.78 +0.2 512,749 - MMP_RS02690 0.82 -0.6 512,878 - -0.5 512,911 + +1.2 512,912 - -2.5 512,939 - -1.3 512,939 - -1.2 512,940 + +0.4 512,960 - +1.3 513,018 + +0.2 513,042 + +0.1 513,139 - MMP_RS02695 0.14 -3.4 513,371 - MMP_RS02695 0.27 +0.8 513,442 + MMP_RS02695 0.31 -0.6 513,445 + MMP_RS02695 0.31 -1.6 513,832 - MMP_RS02695 0.53 -1.7
Or see this region's nucleotide sequence