Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02660

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS02655 and MMP_RS02660 are separated by 460 nucleotidesMMP_RS02660 and MMP_RS02665 are separated by 411 nucleotidesMMP_RS02665 and MMP_RS02670 are separated by 55 nucleotides MMP_RS02655: MMP_RS02655 - terpene cyclase/mutase family protein, at 504,522 to 506,024 _RS02655 MMP_RS02660: MMP_RS02660 - hypothetical protein, at 506,485 to 507,573 _RS02660 MMP_RS02665: MMP_RS02665 - hypothetical protein, at 507,985 to 508,290 _RS02665 MMP_RS02670: MMP_RS02670 - ATP-binding cassette domain-containing protein, at 508,346 to 509,377 _RS02670 Position (kb) 506 507 508Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 505.485 kb on - strand, within MMP_RS02655at 505.534 kb on + strand, within MMP_RS02655at 505.627 kb on - strand, within MMP_RS02655at 506.107 kb on - strandat 506.156 kb on - strandat 506.209 kb on - strandat 506.253 kb on - strandat 506.261 kb on + strandat 506.411 kb on + strandat 506.447 kb on - strandat 506.668 kb on - strand, within MMP_RS02660at 506.670 kb on - strand, within MMP_RS02660at 506.670 kb on - strand, within MMP_RS02660at 506.674 kb on - strand, within MMP_RS02660at 506.755 kb on + strand, within MMP_RS02660at 506.762 kb on + strand, within MMP_RS02660at 506.764 kb on + strand, within MMP_RS02660at 506.766 kb on - strand, within MMP_RS02660at 506.767 kb on + strand, within MMP_RS02660at 506.770 kb on - strand, within MMP_RS02660at 506.770 kb on - strand, within MMP_RS02660at 506.771 kb on + strand, within MMP_RS02660at 506.771 kb on + strand, within MMP_RS02660at 506.776 kb on + strand, within MMP_RS02660at 506.813 kb on - strand, within MMP_RS02660at 506.857 kb on + strand, within MMP_RS02660at 506.938 kb on + strand, within MMP_RS02660at 507.000 kb on - strand, within MMP_RS02660at 507.001 kb on + strand, within MMP_RS02660at 507.015 kb on - strand, within MMP_RS02660at 507.016 kb on + strand, within MMP_RS02660at 507.063 kb on + strand, within MMP_RS02660at 507.070 kb on - strand, within MMP_RS02660at 507.071 kb on + strand, within MMP_RS02660at 507.091 kb on - strand, within MMP_RS02660at 507.096 kb on - strand, within MMP_RS02660at 507.097 kb on + strand, within MMP_RS02660at 507.102 kb on - strand, within MMP_RS02660at 507.128 kb on - strand, within MMP_RS02660at 507.129 kb on + strand, within MMP_RS02660at 507.137 kb on + strand, within MMP_RS02660at 507.150 kb on - strand, within MMP_RS02660at 507.234 kb on - strand, within MMP_RS02660at 507.234 kb on - strand, within MMP_RS02660at 507.234 kb on - strand, within MMP_RS02660at 507.234 kb on - strand, within MMP_RS02660at 507.234 kb on - strand, within MMP_RS02660at 507.234 kb on - strand, within MMP_RS02660at 507.235 kb on + strand, within MMP_RS02660at 507.235 kb on + strand, within MMP_RS02660at 507.250 kb on - strand, within MMP_RS02660at 507.250 kb on - strand, within MMP_RS02660at 507.250 kb on - strand, within MMP_RS02660at 507.251 kb on + strand, within MMP_RS02660at 507.253 kb on - strand, within MMP_RS02660at 507.254 kb on + strand, within MMP_RS02660at 507.254 kb on + strand, within MMP_RS02660at 507.256 kb on + strand, within MMP_RS02660at 507.303 kb on - strand, within MMP_RS02660at 507.316 kb on + strand, within MMP_RS02660at 507.316 kb on + strand, within MMP_RS02660at 507.316 kb on + strand, within MMP_RS02660at 507.318 kb on - strand, within MMP_RS02660at 507.320 kb on - strand, within MMP_RS02660at 507.331 kb on - strand, within MMP_RS02660at 507.356 kb on - strand, within MMP_RS02660at 507.357 kb on + strand, within MMP_RS02660at 507.360 kb on - strand, within MMP_RS02660at 507.360 kb on - strand, within MMP_RS02660at 507.360 kb on - strand, within MMP_RS02660at 507.392 kb on + strand, within MMP_RS02660at 507.407 kb on + strand, within MMP_RS02660at 507.412 kb on - strand, within MMP_RS02660at 507.464 kb on + strand, within MMP_RS02660at 507.556 kb on + strandat 507.603 kb on - strandat 507.604 kb on + strandat 507.626 kb on + strandat 507.696 kb on + strandat 507.733 kb on + strandat 507.753 kb on - strandat 507.761 kb on - strandat 507.762 kb on + strandat 507.764 kb on + strandat 507.812 kb on + strandat 507.826 kb on + strandat 507.878 kb on - strandat 508.288 kb on - strandat 508.293 kb on + strandat 508.304 kb on + strandat 508.375 kb on + strandat 508.448 kb on - strandat 508.448 kb on - strandat 508.449 kb on + strandat 508.449 kb on + strandat 508.523 kb on - strand, within MMP_RS02670at 508.558 kb on - strand, within MMP_RS02670at 508.558 kb on - strand, within MMP_RS02670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
remove
505,485 - MMP_RS02655 0.64 +1.1
505,534 + MMP_RS02655 0.67 -2.1
505,627 - MMP_RS02655 0.74 +0.7
506,107 - -0.2
506,156 - -0.3
506,209 - +1.4
506,253 - +0.3
506,261 + -1.9
506,411 + -0.5
506,447 - -0.9
506,668 - MMP_RS02660 0.17 +0.8
506,670 - MMP_RS02660 0.17 -2.3
506,670 - MMP_RS02660 0.17 -0.3
506,674 - MMP_RS02660 0.17 +1.1
506,755 + MMP_RS02660 0.25 +2.5
506,762 + MMP_RS02660 0.25 +1.4
506,764 + MMP_RS02660 0.26 -0.3
506,766 - MMP_RS02660 0.26 +0.3
506,767 + MMP_RS02660 0.26 +0.4
506,770 - MMP_RS02660 0.26 +1.8
506,770 - MMP_RS02660 0.26 -0.1
506,771 + MMP_RS02660 0.26 -1.5
506,771 + MMP_RS02660 0.26 +0.3
506,776 + MMP_RS02660 0.27 +0.5
506,813 - MMP_RS02660 0.30 -0.2
506,857 + MMP_RS02660 0.34 -0.1
506,938 + MMP_RS02660 0.42 +0.6
507,000 - MMP_RS02660 0.47 +0.5
507,001 + MMP_RS02660 0.47 -0.0
507,015 - MMP_RS02660 0.49 +2.0
507,016 + MMP_RS02660 0.49 +1.0
507,063 + MMP_RS02660 0.53 -2.1
507,070 - MMP_RS02660 0.54 -0.4
507,071 + MMP_RS02660 0.54 +0.1
507,091 - MMP_RS02660 0.56 +1.2
507,096 - MMP_RS02660 0.56 -1.3
507,097 + MMP_RS02660 0.56 -1.8
507,102 - MMP_RS02660 0.57 +0.4
507,128 - MMP_RS02660 0.59 -1.1
507,129 + MMP_RS02660 0.59 +0.9
507,137 + MMP_RS02660 0.60 -0.8
507,150 - MMP_RS02660 0.61 -1.5
507,234 - MMP_RS02660 0.69 +1.0
507,234 - MMP_RS02660 0.69 -0.3
507,234 - MMP_RS02660 0.69 +0.8
507,234 - MMP_RS02660 0.69 +0.0
507,234 - MMP_RS02660 0.69 -0.3
507,234 - MMP_RS02660 0.69 -2.4
507,235 + MMP_RS02660 0.69 +0.5
507,235 + MMP_RS02660 0.69 -1.6
507,250 - MMP_RS02660 0.70 -1.3
507,250 - MMP_RS02660 0.70 +0.8
507,250 - MMP_RS02660 0.70 +0.0
507,251 + MMP_RS02660 0.70 -0.6
507,253 - MMP_RS02660 0.71 -1.5
507,254 + MMP_RS02660 0.71 -1.4
507,254 + MMP_RS02660 0.71 +0.2
507,256 + MMP_RS02660 0.71 +0.4
507,303 - MMP_RS02660 0.75 -1.3
507,316 + MMP_RS02660 0.76 +0.8
507,316 + MMP_RS02660 0.76 +0.6
507,316 + MMP_RS02660 0.76 -0.5
507,318 - MMP_RS02660 0.76 +1.1
507,320 - MMP_RS02660 0.77 +2.1
507,331 - MMP_RS02660 0.78 +0.4
507,356 - MMP_RS02660 0.80 +0.4
507,357 + MMP_RS02660 0.80 -0.9
507,360 - MMP_RS02660 0.80 -0.8
507,360 - MMP_RS02660 0.80 +0.5
507,360 - MMP_RS02660 0.80 +0.2
507,392 + MMP_RS02660 0.83 -0.7
507,407 + MMP_RS02660 0.85 -1.8
507,412 - MMP_RS02660 0.85 -1.1
507,464 + MMP_RS02660 0.90 +1.9
507,556 + -0.9
507,603 - +0.3
507,604 + -2.9
507,626 + +1.4
507,696 + +0.4
507,733 + +0.6
507,753 - -5.1
507,761 - -2.2
507,762 + +0.1
507,764 + +0.9
507,812 + +0.1
507,826 + -0.8
507,878 - +0.6
508,288 - +1.2
508,293 + +1.4
508,304 + +0.7
508,375 + -1.5
508,448 - -0.4
508,448 - -0.5
508,449 + -2.0
508,449 + -0.6
508,523 - MMP_RS02670 0.17 +0.7
508,558 - MMP_RS02670 0.21 +0.3
508,558 - MMP_RS02670 0.21 +1.5

Or see this region's nucleotide sequence