Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02585 and MMP_RS02590 are separated by 86 nucleotides MMP_RS02590 and MMP_RS02595 are separated by 212 nucleotides MMP_RS02595 and MMP_RS02600 are separated by 302 nucleotides
MMP_RS02585: MMP_RS02585 - methyl-accepting chemotaxis protein, at 483,526 to 485,715
_RS02585
MMP_RS02590: MMP_RS02590 - low molecular weight phosphatase family protein, at 485,802 to 486,212
_RS02590
MMP_RS02595: MMP_RS02595 - putative zinc-binding protein, at 486,425 to 486,886
_RS02595
MMP_RS02600: MMP_RS02600 - DUF2149 domain-containing protein, at 487,189 to 487,527
_RS02600
Position (kb) 485
486
487 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 484.827 kb on - strand, within MMP_RS02585 at 484.972 kb on - strand, within MMP_RS02585 at 485.327 kb on - strand, within MMP_RS02585 at 485.335 kb on + strand, within MMP_RS02585 at 485.335 kb on + strand, within MMP_RS02585 at 485.685 kb on + strand at 485.689 kb on + strand at 485.754 kb on + strand at 485.783 kb on - strand at 485.844 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.899 kb on + strand, within MMP_RS02590 at 485.965 kb on + strand, within MMP_RS02590 at 485.965 kb on + strand, within MMP_RS02590 at 485.993 kb on - strand, within MMP_RS02590 at 486.169 kb on + strand, within MMP_RS02590 at 486.207 kb on + strand at 486.232 kb on - strand at 486.244 kb on - strand at 486.249 kb on - strand at 486.249 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.254 kb on + strand at 486.254 kb on + strand at 486.255 kb on - strand at 486.255 kb on - strand at 486.256 kb on + strand at 486.269 kb on - strand at 486.269 kb on - strand at 486.270 kb on + strand at 486.271 kb on - strand at 486.271 kb on - strand at 486.272 kb on + strand at 486.281 kb on - strand at 486.291 kb on - strand at 486.292 kb on + strand at 486.293 kb on - strand at 486.319 kb on - strand at 486.346 kb on - strand at 486.347 kb on + strand at 486.712 kb on - strand, within MMP_RS02595 at 486.886 kb on - strand at 486.890 kb on - strand at 486.929 kb on - strand at 486.934 kb on - strand at 486.937 kb on - strand at 486.937 kb on - strand at 486.938 kb on + strand at 486.981 kb on + strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 487.065 kb on - strand at 487.066 kb on + strand at 487.072 kb on - strand at 487.073 kb on + strand at 487.073 kb on + strand at 487.083 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.091 kb on + strand at 487.094 kb on - strand at 487.094 kb on - strand at 487.095 kb on + strand at 487.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 484,827 - MMP_RS02585 0.59 +0.7 484,972 - MMP_RS02585 0.66 -1.5 485,327 - MMP_RS02585 0.82 +0.4 485,335 + MMP_RS02585 0.83 +1.7 485,335 + MMP_RS02585 0.83 -0.0 485,685 + +0.7 485,689 + -0.1 485,754 + +1.8 485,783 - +1.2 485,844 - MMP_RS02590 0.10 -0.0 485,898 - MMP_RS02590 0.23 +1.0 485,898 - MMP_RS02590 0.23 +0.6 485,898 - MMP_RS02590 0.23 +0.1 485,898 - MMP_RS02590 0.23 -0.5 485,898 - MMP_RS02590 0.23 -0.3 485,898 - MMP_RS02590 0.23 -0.1 485,899 + MMP_RS02590 0.24 +0.2 485,965 + MMP_RS02590 0.40 +0.9 485,965 + MMP_RS02590 0.40 +0.4 485,993 - MMP_RS02590 0.46 +2.1 486,169 + MMP_RS02590 0.89 -1.1 486,207 + -0.4 486,232 - +0.2 486,244 - -0.7 486,249 - +0.3 486,249 - +0.2 486,253 - +0.8 486,253 - +1.3 486,253 - -0.7 486,254 + +0.2 486,254 + -0.6 486,255 - +0.6 486,255 - +2.5 486,256 + -1.6 486,269 - -3.3 486,269 - +1.5 486,270 + +0.7 486,271 - +0.5 486,271 - +0.2 486,272 + +0.1 486,281 - +1.1 486,291 - +0.5 486,292 + +1.9 486,293 - -3.2 486,319 - +0.5 486,346 - +0.4 486,347 + +0.8 486,712 - MMP_RS02595 0.62 +1.5 486,886 - -0.3 486,890 - -0.3 486,929 - +0.9 486,934 - +0.1 486,937 - +0.5 486,937 - -0.2 486,938 + +0.4 486,981 + -0.3 486,987 - +0.9 486,987 - -3.0 486,987 - +0.8 486,987 - +0.7 486,987 - +0.3 486,988 + +0.2 486,988 + -0.4 486,988 + +0.2 486,988 + +0.5 486,988 + +0.0 487,065 - -0.9 487,066 + +2.7 487,072 - +0.6 487,073 + -0.4 487,073 + -5.5 487,083 - -1.7 487,090 - -2.2 487,090 - +1.0 487,090 - -0.4 487,090 - +0.4 487,090 - -1.0 487,091 + +2.4 487,094 - +1.7 487,094 - +1.2 487,095 + +1.0 487,209 - +1.1
Or see this region's nucleotide sequence