Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02570 and MMP_RS02575 are separated by 524 nucleotides MMP_RS02575 and MMP_RS02580 are separated by 373 nucleotides
MMP_RS02570: MMP_RS02570 - cation:proton antiporter, at 479,516 to 481,144
_RS02570
MMP_RS02575: MMP_RS02575 - CAAX prenyl protease Rce1, at 481,669 to 482,484
_RS02575
MMP_RS02580: MMP_RS02580 - cupin domain-containing protein, at 482,858 to 483,295
_RS02580
Position (kb) 481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 480.830 kb on + strand, within MMP_RS02570 at 480.834 kb on + strand, within MMP_RS02570 at 480.834 kb on + strand, within MMP_RS02570 at 480.838 kb on - strand, within MMP_RS02570 at 480.839 kb on + strand, within MMP_RS02570 at 480.868 kb on + strand, within MMP_RS02570 at 480.879 kb on + strand, within MMP_RS02570 at 480.879 kb on + strand, within MMP_RS02570 at 480.881 kb on + strand, within MMP_RS02570 at 480.932 kb on - strand, within MMP_RS02570 at 480.933 kb on + strand, within MMP_RS02570 at 481.109 kb on - strand at 481.114 kb on - strand at 481.114 kb on - strand at 481.114 kb on - strand at 481.115 kb on + strand at 481.178 kb on - strand at 481.178 kb on - strand at 481.198 kb on - strand at 481.198 kb on - strand at 481.199 kb on + strand at 481.199 kb on + strand at 481.260 kb on + strand at 481.262 kb on + strand at 481.295 kb on + strand at 481.308 kb on - strand at 481.309 kb on + strand at 481.309 kb on + strand at 481.311 kb on + strand at 481.459 kb on - strand at 481.482 kb on - strand at 481.482 kb on - strand at 481.482 kb on - strand at 481.483 kb on + strand at 481.529 kb on - strand at 481.529 kb on - strand at 481.530 kb on + strand at 481.530 kb on + strand at 481.604 kb on - strand at 481.613 kb on - strand at 481.690 kb on + strand at 481.737 kb on + strand at 481.784 kb on - strand, within MMP_RS02575 at 481.787 kb on + strand, within MMP_RS02575 at 481.838 kb on - strand, within MMP_RS02575 at 481.882 kb on + strand, within MMP_RS02575 at 481.958 kb on - strand, within MMP_RS02575 at 481.958 kb on - strand, within MMP_RS02575 at 481.962 kb on + strand, within MMP_RS02575 at 481.974 kb on + strand, within MMP_RS02575 at 482.070 kb on + strand, within MMP_RS02575 at 482.154 kb on - strand, within MMP_RS02575 at 482.157 kb on + strand, within MMP_RS02575 at 482.249 kb on + strand, within MMP_RS02575 at 482.255 kb on - strand, within MMP_RS02575 at 482.293 kb on + strand, within MMP_RS02575 at 482.363 kb on - strand, within MMP_RS02575 at 482.378 kb on - strand, within MMP_RS02575 at 482.384 kb on - strand, within MMP_RS02575 at 482.384 kb on - strand, within MMP_RS02575 at 482.395 kb on + strand, within MMP_RS02575 at 482.405 kb on - strand at 482.439 kb on - strand at 482.443 kb on + strand at 482.449 kb on - strand at 482.450 kb on + strand at 482.505 kb on - strand at 482.512 kb on - strand at 482.544 kb on - strand at 482.677 kb on - strand at 482.756 kb on - strand at 482.756 kb on - strand at 482.756 kb on - strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.758 kb on - strand at 482.758 kb on - strand at 482.758 kb on - strand at 482.759 kb on + strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.762 kb on - strand at 482.762 kb on - strand at 482.762 kb on - strand at 482.824 kb on + strand at 482.864 kb on - strand at 482.896 kb on - strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.936 kb on - strand, within MMP_RS02580 at 482.937 kb on + strand, within MMP_RS02580 at 482.959 kb on + strand, within MMP_RS02580 at 483.026 kb on + strand, within MMP_RS02580 at 483.031 kb on - strand, within MMP_RS02580 at 483.032 kb on + strand, within MMP_RS02580 at 483.152 kb on - strand, within MMP_RS02580 at 483.168 kb on - strand, within MMP_RS02580 at 483.169 kb on + strand, within MMP_RS02580 at 483.279 kb on + strand at 483.284 kb on + strand at 483.297 kb on - strand at 483.320 kb on - strand at 483.358 kb on - strand at 483.359 kb on + strand at 483.361 kb on + strand at 483.363 kb on - strand at 483.364 kb on + strand at 483.413 kb on - strand at 483.436 kb on - strand at 483.436 kb on - strand at 483.436 kb on - strand at 483.437 kb on + strand at 483.450 kb on + strand at 483.451 kb on - strand at 483.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 480,830 + MMP_RS02570 0.81 +1.1 480,834 + MMP_RS02570 0.81 -0.0 480,834 + MMP_RS02570 0.81 -0.6 480,838 - MMP_RS02570 0.81 +0.5 480,839 + MMP_RS02570 0.81 +0.3 480,868 + MMP_RS02570 0.83 -0.2 480,879 + MMP_RS02570 0.84 +0.4 480,879 + MMP_RS02570 0.84 -1.0 480,881 + MMP_RS02570 0.84 -0.4 480,932 - MMP_RS02570 0.87 +1.5 480,933 + MMP_RS02570 0.87 +1.6 481,109 - -1.2 481,114 - +1.5 481,114 - +1.7 481,114 - +1.4 481,115 + +1.4 481,178 - +1.0 481,178 - -0.1 481,198 - +0.4 481,198 - -0.1 481,199 + -1.1 481,199 + +0.0 481,260 + -1.9 481,262 + -2.3 481,295 + +0.3 481,308 - -0.6 481,309 + -0.5 481,309 + +0.5 481,311 + +0.2 481,459 - +0.0 481,482 - +0.1 481,482 - +1.4 481,482 - -0.8 481,483 + -2.4 481,529 - +1.5 481,529 - -0.3 481,530 + -1.0 481,530 + +0.9 481,604 - +0.6 481,613 - -0.3 481,690 + +1.2 481,737 + +1.3 481,784 - MMP_RS02575 0.14 +0.3 481,787 + MMP_RS02575 0.14 +0.6 481,838 - MMP_RS02575 0.21 +1.1 481,882 + MMP_RS02575 0.26 -1.5 481,958 - MMP_RS02575 0.35 -2.8 481,958 - MMP_RS02575 0.35 +1.0 481,962 + MMP_RS02575 0.36 +0.4 481,974 + MMP_RS02575 0.37 +0.4 482,070 + MMP_RS02575 0.49 -0.4 482,154 - MMP_RS02575 0.59 -0.2 482,157 + MMP_RS02575 0.60 +1.0 482,249 + MMP_RS02575 0.71 -2.8 482,255 - MMP_RS02575 0.72 +1.6 482,293 + MMP_RS02575 0.76 +0.3 482,363 - MMP_RS02575 0.85 -2.1 482,378 - MMP_RS02575 0.87 +0.3 482,384 - MMP_RS02575 0.88 -2.2 482,384 - MMP_RS02575 0.88 -0.6 482,395 + MMP_RS02575 0.89 -0.1 482,405 - +2.2 482,439 - +1.7 482,443 + -0.1 482,449 - +0.9 482,450 + +0.2 482,505 - -0.4 482,512 - +1.7 482,544 - +0.4 482,677 - +1.3 482,756 - +1.3 482,756 - +0.3 482,756 - +0.0 482,757 + -0.0 482,757 + +1.2 482,757 + -0.9 482,757 + -3.8 482,757 + +0.2 482,758 - +0.2 482,758 - -0.2 482,758 - +1.1 482,759 + +0.7 482,760 - +0.5 482,760 - +1.1 482,760 - +0.2 482,760 - +1.0 482,761 + -1.2 482,761 + -0.7 482,761 + -0.4 482,761 + -0.1 482,761 + +3.8 482,761 + +0.1 482,761 + -1.2 482,761 + +0.0 482,762 - +0.1 482,762 - +1.0 482,762 - +0.4 482,824 + +0.1 482,864 - -0.8 482,896 - +1.2 482,897 + +1.4 482,897 + +0.4 482,897 + -1.1 482,897 + -0.3 482,936 - MMP_RS02580 0.18 -2.1 482,937 + MMP_RS02580 0.18 -1.3 482,959 + MMP_RS02580 0.23 +0.4 483,026 + MMP_RS02580 0.38 -0.5 483,031 - MMP_RS02580 0.39 +1.3 483,032 + MMP_RS02580 0.40 -0.9 483,152 - MMP_RS02580 0.67 -0.2 483,168 - MMP_RS02580 0.71 +0.9 483,169 + MMP_RS02580 0.71 -0.6 483,279 + +0.4 483,284 + +0.4 483,297 - -0.5 483,320 - -0.2 483,358 - -1.0 483,359 + -0.7 483,361 + -0.9 483,363 - -1.3 483,364 + +0.7 483,413 - +1.2 483,436 - +0.4 483,436 - -0.5 483,436 - +1.1 483,437 + +0.9 483,450 + +2.2 483,451 - -1.4 483,451 - -2.5
Or see this region's nucleotide sequence