Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02515

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02510 and MMP_RS02515 are separated by 104 nucleotidesMMP_RS02515 and MMP_RS02520 are separated by 26 nucleotidesMMP_RS02520 and MMP_RS02525 are separated by 134 nucleotides MMP_RS02510: MMP_RS02510 - site-specific integrase, at 468,086 to 469,072 _RS02510 MMP_RS02515: MMP_RS02515 - hypothetical protein, at 469,177 to 470,175 _RS02515 MMP_RS02520: MMP_RS02520 - hypothetical protein, at 470,202 to 471,008 _RS02520 MMP_RS02525: MMP_RS02525 - DUF2254 domain-containing protein, at 471,143 to 472,984 _RS02525 Position (kb) 469 470 471Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 468.230 kb on + strand, within MMP_RS02510at 468.294 kb on + strand, within MMP_RS02510at 468.395 kb on + strand, within MMP_RS02510at 468.485 kb on - strand, within MMP_RS02510at 468.486 kb on + strand, within MMP_RS02510at 468.570 kb on - strand, within MMP_RS02510at 468.570 kb on - strand, within MMP_RS02510at 468.747 kb on + strand, within MMP_RS02510at 468.915 kb on - strand, within MMP_RS02510at 468.943 kb on + strand, within MMP_RS02510at 469.011 kb on + strandat 469.054 kb on - strandat 469.081 kb on + strandat 469.291 kb on - strand, within MMP_RS02515at 469.292 kb on + strand, within MMP_RS02515at 469.310 kb on - strand, within MMP_RS02515at 469.465 kb on + strand, within MMP_RS02515at 469.499 kb on - strand, within MMP_RS02515at 469.499 kb on - strand, within MMP_RS02515at 469.500 kb on + strand, within MMP_RS02515at 469.500 kb on + strand, within MMP_RS02515at 469.500 kb on + strand, within MMP_RS02515at 469.500 kb on + strand, within MMP_RS02515at 469.500 kb on + strand, within MMP_RS02515at 469.500 kb on + strand, within MMP_RS02515at 469.503 kb on - strand, within MMP_RS02515at 469.507 kb on - strand, within MMP_RS02515at 469.508 kb on + strand, within MMP_RS02515at 469.508 kb on + strand, within MMP_RS02515at 469.581 kb on - strand, within MMP_RS02515at 469.622 kb on - strand, within MMP_RS02515at 469.630 kb on + strand, within MMP_RS02515at 469.731 kb on + strand, within MMP_RS02515at 469.764 kb on + strand, within MMP_RS02515at 469.764 kb on + strand, within MMP_RS02515at 469.768 kb on + strand, within MMP_RS02515at 469.768 kb on + strand, within MMP_RS02515at 469.768 kb on + strand, within MMP_RS02515at 469.788 kb on - strand, within MMP_RS02515at 469.789 kb on + strand, within MMP_RS02515at 469.876 kb on + strand, within MMP_RS02515at 469.877 kb on - strand, within MMP_RS02515at 469.968 kb on - strand, within MMP_RS02515at 469.969 kb on + strand, within MMP_RS02515at 470.020 kb on + strand, within MMP_RS02515at 470.020 kb on + strand, within MMP_RS02515at 470.022 kb on - strand, within MMP_RS02515at 470.061 kb on - strand, within MMP_RS02515at 470.062 kb on + strand, within MMP_RS02515at 470.062 kb on + strand, within MMP_RS02515at 470.104 kb on - strandat 470.104 kb on - strandat 470.105 kb on + strandat 470.112 kb on + strandat 470.112 kb on + strandat 470.136 kb on - strandat 470.136 kb on - strandat 470.136 kb on - strandat 470.200 kb on - strandat 470.212 kb on - strandat 470.216 kb on - strandat 470.267 kb on - strandat 470.270 kb on - strandat 470.277 kb on - strandat 470.277 kb on - strandat 470.278 kb on + strandat 470.278 kb on + strandat 470.298 kb on - strand, within MMP_RS02520at 470.299 kb on + strand, within MMP_RS02520at 470.299 kb on + strand, within MMP_RS02520at 470.299 kb on + strand, within MMP_RS02520at 470.299 kb on + strand, within MMP_RS02520at 470.299 kb on + strand, within MMP_RS02520at 470.304 kb on + strand, within MMP_RS02520at 470.304 kb on + strand, within MMP_RS02520at 470.308 kb on + strand, within MMP_RS02520at 470.363 kb on + strand, within MMP_RS02520at 470.377 kb on - strand, within MMP_RS02520at 470.377 kb on - strand, within MMP_RS02520at 470.377 kb on - strand, within MMP_RS02520at 470.377 kb on - strand, within MMP_RS02520at 470.428 kb on - strand, within MMP_RS02520at 470.441 kb on - strand, within MMP_RS02520at 470.441 kb on - strand, within MMP_RS02520at 470.447 kb on - strand, within MMP_RS02520at 470.450 kb on + strand, within MMP_RS02520at 470.474 kb on + strand, within MMP_RS02520at 470.487 kb on + strand, within MMP_RS02520at 470.499 kb on + strand, within MMP_RS02520at 470.576 kb on + strand, within MMP_RS02520at 470.582 kb on - strand, within MMP_RS02520at 470.582 kb on - strand, within MMP_RS02520at 470.587 kb on - strand, within MMP_RS02520at 470.655 kb on + strand, within MMP_RS02520at 470.662 kb on - strand, within MMP_RS02520at 470.692 kb on - strand, within MMP_RS02520at 470.764 kb on - strand, within MMP_RS02520at 470.765 kb on + strand, within MMP_RS02520at 470.913 kb on + strand, within MMP_RS02520at 470.913 kb on + strand, within MMP_RS02520at 470.965 kb on - strandat 470.965 kb on - strandat 470.971 kb on - strandat 470.971 kb on - strandat 470.971 kb on - strandat 470.998 kb on - strandat 470.998 kb on - strandat 470.999 kb on + strandat 470.999 kb on + strandat 471.050 kb on - strandat 471.120 kb on + strandat 471.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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468,230 + MMP_RS02510 0.15 +0.4
468,294 + MMP_RS02510 0.21 +1.7
468,395 + MMP_RS02510 0.31 -0.7
468,485 - MMP_RS02510 0.40 +1.5
468,486 + MMP_RS02510 0.41 -0.3
468,570 - MMP_RS02510 0.49 +0.4
468,570 - MMP_RS02510 0.49 -0.1
468,747 + MMP_RS02510 0.67 -0.6
468,915 - MMP_RS02510 0.84 -1.3
468,943 + MMP_RS02510 0.87 -0.3
469,011 + -0.3
469,054 - +3.1
469,081 + +2.2
469,291 - MMP_RS02515 0.11 +0.7
469,292 + MMP_RS02515 0.12 +1.0
469,310 - MMP_RS02515 0.13 +0.8
469,465 + MMP_RS02515 0.29 -0.5
469,499 - MMP_RS02515 0.32 -0.3
469,499 - MMP_RS02515 0.32 +0.4
469,500 + MMP_RS02515 0.32 -1.6
469,500 + MMP_RS02515 0.32 +0.1
469,500 + MMP_RS02515 0.32 +1.2
469,500 + MMP_RS02515 0.32 +0.2
469,500 + MMP_RS02515 0.32 +0.4
469,500 + MMP_RS02515 0.32 -4.5
469,503 - MMP_RS02515 0.33 +0.2
469,507 - MMP_RS02515 0.33 -0.6
469,508 + MMP_RS02515 0.33 -0.7
469,508 + MMP_RS02515 0.33 +1.0
469,581 - MMP_RS02515 0.40 -0.3
469,622 - MMP_RS02515 0.45 +0.8
469,630 + MMP_RS02515 0.45 -0.4
469,731 + MMP_RS02515 0.55 +4.0
469,764 + MMP_RS02515 0.59 -0.3
469,764 + MMP_RS02515 0.59 +0.2
469,768 + MMP_RS02515 0.59 +0.0
469,768 + MMP_RS02515 0.59 -0.1
469,768 + MMP_RS02515 0.59 +3.1
469,788 - MMP_RS02515 0.61 +2.7
469,789 + MMP_RS02515 0.61 +1.1
469,876 + MMP_RS02515 0.70 +1.2
469,877 - MMP_RS02515 0.70 +0.2
469,968 - MMP_RS02515 0.79 +1.0
469,969 + MMP_RS02515 0.79 -0.6
470,020 + MMP_RS02515 0.84 -1.2
470,020 + MMP_RS02515 0.84 +1.0
470,022 - MMP_RS02515 0.85 +0.9
470,061 - MMP_RS02515 0.88 +1.4
470,062 + MMP_RS02515 0.89 +1.4
470,062 + MMP_RS02515 0.89 -0.1
470,104 - +1.1
470,104 - +0.4
470,105 + -0.5
470,112 + -0.0
470,112 + +0.6
470,136 - +0.2
470,136 - +0.8
470,136 - +0.8
470,200 - -0.2
470,212 - +2.0
470,216 - -1.0
470,267 - -0.4
470,270 - -3.4
470,277 - +1.2
470,277 - -0.6
470,278 + -1.7
470,278 + +0.5
470,298 - MMP_RS02520 0.12 +0.6
470,299 + MMP_RS02520 0.12 -0.5
470,299 + MMP_RS02520 0.12 +0.7
470,299 + MMP_RS02520 0.12 +0.0
470,299 + MMP_RS02520 0.12 +0.2
470,299 + MMP_RS02520 0.12 -0.5
470,304 + MMP_RS02520 0.13 +1.1
470,304 + MMP_RS02520 0.13 +0.2
470,308 + MMP_RS02520 0.13 -2.9
470,363 + MMP_RS02520 0.20 -2.5
470,377 - MMP_RS02520 0.22 +1.9
470,377 - MMP_RS02520 0.22 +1.6
470,377 - MMP_RS02520 0.22 +0.1
470,377 - MMP_RS02520 0.22 +1.4
470,428 - MMP_RS02520 0.28 -3.2
470,441 - MMP_RS02520 0.30 -1.5
470,441 - MMP_RS02520 0.30 +0.8
470,447 - MMP_RS02520 0.30 +0.3
470,450 + MMP_RS02520 0.31 +1.9
470,474 + MMP_RS02520 0.34 -0.5
470,487 + MMP_RS02520 0.35 +0.1
470,499 + MMP_RS02520 0.37 -0.4
470,576 + MMP_RS02520 0.46 +1.5
470,582 - MMP_RS02520 0.47 +0.1
470,582 - MMP_RS02520 0.47 -0.2
470,587 - MMP_RS02520 0.48 +1.0
470,655 + MMP_RS02520 0.56 +1.5
470,662 - MMP_RS02520 0.57 -0.5
470,692 - MMP_RS02520 0.61 -1.0
470,764 - MMP_RS02520 0.70 +0.3
470,765 + MMP_RS02520 0.70 +1.5
470,913 + MMP_RS02520 0.88 +0.6
470,913 + MMP_RS02520 0.88 +0.7
470,965 - +3.4
470,965 - -0.8
470,971 - +0.6
470,971 - -0.8
470,971 - -1.2
470,998 - +0.2
470,998 - -1.2
470,999 + +0.0
470,999 + +0.4
471,050 - +1.0
471,120 + +0.6
471,121 - -1.5

Or see this region's nucleotide sequence