Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01680 and MMP_RS01685 overlap by 8 nucleotides MMP_RS01685 and MMP_RS01690 overlap by 4 nucleotides
MMP_RS01680: MMP_RS01680 - phenylacetate--CoA ligase, at 308,925 to 310,169
_RS01680
MMP_RS01685: MMP_RS01685 - indolepyruvate oxidoreductase subunit beta, at 310,162 to 310,761
_RS01685
MMP_RS01690: MMP_RS01690 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 310,758 to 312,596
_RS01690
Position (kb) 310
311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 309.276 kb on + strand, within MMP_RS01680 at 309.344 kb on - strand, within MMP_RS01680 at 309.489 kb on - strand, within MMP_RS01680 at 309.489 kb on - strand, within MMP_RS01680 at 309.489 kb on - strand, within MMP_RS01680 at 309.490 kb on + strand, within MMP_RS01680 at 309.509 kb on - strand, within MMP_RS01680 at 309.821 kb on - strand, within MMP_RS01680 at 309.828 kb on + strand, within MMP_RS01680 at 309.879 kb on + strand, within MMP_RS01680 at 309.882 kb on - strand, within MMP_RS01680 at 309.883 kb on + strand, within MMP_RS01680 at 309.898 kb on - strand, within MMP_RS01680 at 309.903 kb on - strand, within MMP_RS01680 at 309.943 kb on + strand, within MMP_RS01680 at 310.049 kb on - strand at 310.050 kb on + strand at 310.065 kb on - strand at 310.065 kb on - strand at 310.065 kb on - strand at 310.397 kb on - strand, within MMP_RS01685 at 310.486 kb on - strand, within MMP_RS01685 at 310.745 kb on + strand at 310.997 kb on + strand, within MMP_RS01690 at 311.111 kb on - strand, within MMP_RS01690 at 311.229 kb on - strand, within MMP_RS01690 at 311.427 kb on + strand, within MMP_RS01690 at 311.619 kb on - strand, within MMP_RS01690 at 311.620 kb on + strand, within MMP_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 309,276 + MMP_RS01680 0.28 -0.8 309,344 - MMP_RS01680 0.34 -1.4 309,489 - MMP_RS01680 0.45 -1.8 309,489 - MMP_RS01680 0.45 +0.4 309,489 - MMP_RS01680 0.45 -0.3 309,490 + MMP_RS01680 0.45 +0.6 309,509 - MMP_RS01680 0.47 -0.0 309,821 - MMP_RS01680 0.72 +2.1 309,828 + MMP_RS01680 0.73 +0.3 309,879 + MMP_RS01680 0.77 -0.1 309,882 - MMP_RS01680 0.77 +0.4 309,883 + MMP_RS01680 0.77 -0.9 309,898 - MMP_RS01680 0.78 +1.0 309,903 - MMP_RS01680 0.79 -1.2 309,943 + MMP_RS01680 0.82 +1.2 310,049 - +0.3 310,050 + -0.3 310,065 - +0.9 310,065 - +1.3 310,065 - -0.8 310,397 - MMP_RS01685 0.39 +1.2 310,486 - MMP_RS01685 0.54 +2.0 310,745 + +0.6 310,997 + MMP_RS01690 0.13 +1.2 311,111 - MMP_RS01690 0.19 -0.3 311,229 - MMP_RS01690 0.26 +1.2 311,427 + MMP_RS01690 0.36 -0.9 311,619 - MMP_RS01690 0.47 -0.8 311,620 + MMP_RS01690 0.47 -0.0
Or see this region's nucleotide sequence