Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01305 and MMP_RS01310 overlap by 20 nucleotides MMP_RS01310 and MMP_RS01315 are separated by 3 nucleotides MMP_RS01315 and MMP_RS01320 are separated by 1 nucleotides MMP_RS01320 and MMP_RS01325 are separated by 12 nucleotides MMP_RS01325 and MMP_RS01330 overlap by 8 nucleotides
MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789
_RS01305
MMP_RS01310: MMP_RS01310 - hypothetical protein, at 245,770 to 246,333
_RS01310
MMP_RS01315: MMP_RS01315 - DUF2341 domain-containing protein, at 246,337 to 248,100
_RS01315
MMP_RS01320: MMP_RS01320 - hypothetical protein, at 248,102 to 248,371
_RS01320
MMP_RS01325: MMP_RS01325 - dihydroneopterin aldolase family protein, at 248,384 to 248,758
_RS01325
MMP_RS01330: MMP_RS01330 - DHH family phosphoesterase, at 248,751 to 249,767
_RS01330
Position (kb) 246
247
248
249 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 245.339 kb on - strand, within MMP_RS01305 at 245.435 kb on - strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.509 kb on - strand, within MMP_RS01305 at 245.560 kb on - strand, within MMP_RS01305 at 245.560 kb on - strand, within MMP_RS01305 at 245.561 kb on + strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.622 kb on + strand, within MMP_RS01305 at 245.625 kb on - strand, within MMP_RS01305 at 245.625 kb on - strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.701 kb on - strand, within MMP_RS01305 at 245.706 kb on + strand at 245.706 kb on + strand at 245.710 kb on + strand at 245.720 kb on - strand at 245.754 kb on - strand at 245.754 kb on - strand at 245.761 kb on - strand at 245.822 kb on - strand at 245.822 kb on - strand at 245.823 kb on + strand at 245.861 kb on + strand, within MMP_RS01310 at 245.893 kb on - strand, within MMP_RS01310 at 245.894 kb on + strand, within MMP_RS01310 at 245.894 kb on + strand, within MMP_RS01310 at 245.901 kb on - strand, within MMP_RS01310 at 245.902 kb on + strand, within MMP_RS01310 at 245.902 kb on + strand, within MMP_RS01310 at 245.905 kb on + strand, within MMP_RS01310 at 245.906 kb on - strand, within MMP_RS01310 at 245.907 kb on + strand, within MMP_RS01310 at 245.929 kb on + strand, within MMP_RS01310 at 245.933 kb on - strand, within MMP_RS01310 at 245.934 kb on + strand, within MMP_RS01310 at 245.945 kb on - strand, within MMP_RS01310 at 245.946 kb on + strand, within MMP_RS01310 at 245.971 kb on + strand, within MMP_RS01310 at 245.991 kb on - strand, within MMP_RS01310 at 245.998 kb on + strand, within MMP_RS01310 at 246.052 kb on + strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.056 kb on + strand, within MMP_RS01310 at 246.060 kb on + strand, within MMP_RS01310 at 246.124 kb on + strand, within MMP_RS01310 at 246.136 kb on + strand, within MMP_RS01310 at 246.157 kb on - strand, within MMP_RS01310 at 246.233 kb on + strand, within MMP_RS01310 at 246.281 kb on + strand at 246.300 kb on - strand at 246.314 kb on - strand at 246.314 kb on - strand at 246.359 kb on - strand at 246.403 kb on + strand at 246.403 kb on + strand at 246.403 kb on + strand at 246.410 kb on - strand at 246.411 kb on + strand at 246.416 kb on - strand at 246.517 kb on + strand, within MMP_RS01315 at 246.520 kb on + strand, within MMP_RS01315 at 246.527 kb on - strand, within MMP_RS01315 at 246.566 kb on + strand, within MMP_RS01315 at 246.604 kb on - strand, within MMP_RS01315 at 246.643 kb on + strand, within MMP_RS01315 at 246.644 kb on - strand, within MMP_RS01315 at 246.702 kb on - strand, within MMP_RS01315 at 246.703 kb on + strand, within MMP_RS01315 at 246.720 kb on - strand, within MMP_RS01315 at 246.720 kb on - strand, within MMP_RS01315 at 246.736 kb on - strand, within MMP_RS01315 at 246.743 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.752 kb on + strand, within MMP_RS01315 at 246.752 kb on + strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.772 kb on - strand, within MMP_RS01315 at 246.772 kb on - strand, within MMP_RS01315 at 246.823 kb on + strand, within MMP_RS01315 at 246.824 kb on - strand, within MMP_RS01315 at 246.824 kb on - strand, within MMP_RS01315 at 246.825 kb on + strand, within MMP_RS01315 at 246.842 kb on - strand, within MMP_RS01315 at 246.942 kb on - strand, within MMP_RS01315 at 246.946 kb on + strand, within MMP_RS01315 at 247.130 kb on - strand, within MMP_RS01315 at 247.193 kb on - strand, within MMP_RS01315 at 247.193 kb on - strand, within MMP_RS01315 at 247.233 kb on + strand, within MMP_RS01315 at 247.235 kb on - strand, within MMP_RS01315 at 247.246 kb on - strand, within MMP_RS01315 at 247.283 kb on - strand, within MMP_RS01315 at 247.307 kb on + strand, within MMP_RS01315 at 247.311 kb on - strand, within MMP_RS01315 at 247.337 kb on + strand, within MMP_RS01315 at 247.337 kb on + strand, within MMP_RS01315 at 247.365 kb on - strand, within MMP_RS01315 at 247.365 kb on - strand, within MMP_RS01315 at 247.431 kb on - strand, within MMP_RS01315 at 247.431 kb on - strand, within MMP_RS01315 at 247.431 kb on - strand, within MMP_RS01315 at 247.432 kb on + strand, within MMP_RS01315 at 247.432 kb on + strand, within MMP_RS01315 at 247.432 kb on + strand, within MMP_RS01315 at 247.432 kb on + strand, within MMP_RS01315 at 247.435 kb on - strand, within MMP_RS01315 at 247.436 kb on + strand, within MMP_RS01315 at 247.436 kb on + strand, within MMP_RS01315 at 247.460 kb on + strand, within MMP_RS01315 at 247.483 kb on - strand, within MMP_RS01315 at 247.486 kb on + strand, within MMP_RS01315 at 247.654 kb on - strand, within MMP_RS01315 at 247.655 kb on + strand, within MMP_RS01315 at 247.757 kb on - strand, within MMP_RS01315 at 247.782 kb on - strand, within MMP_RS01315 at 247.786 kb on - strand, within MMP_RS01315 at 247.786 kb on - strand, within MMP_RS01315 at 247.790 kb on - strand, within MMP_RS01315 at 247.791 kb on + strand, within MMP_RS01315 at 247.816 kb on - strand, within MMP_RS01315 at 247.819 kb on - strand, within MMP_RS01315 at 247.819 kb on - strand, within MMP_RS01315 at 247.820 kb on + strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.852 kb on - strand, within MMP_RS01315 at 247.852 kb on - strand, within MMP_RS01315 at 247.852 kb on - strand, within MMP_RS01315 at 247.853 kb on + strand, within MMP_RS01315 at 247.904 kb on - strand, within MMP_RS01315 at 247.905 kb on + strand, within MMP_RS01315 at 247.908 kb on - strand, within MMP_RS01315 at 247.909 kb on + strand, within MMP_RS01315 at 247.925 kb on + strand at 247.927 kb on - strand at 247.927 kb on - strand at 247.929 kb on - strand at 247.929 kb on - strand at 247.929 kb on - strand at 247.930 kb on + strand at 247.931 kb on - strand at 247.931 kb on - strand at 247.931 kb on - strand at 247.932 kb on + strand at 247.932 kb on + strand at 247.992 kb on - strand at 248.018 kb on - strand at 248.047 kb on - strand at 248.081 kb on - strand at 248.143 kb on - strand, within MMP_RS01320 at 248.218 kb on - strand, within MMP_RS01320 at 248.259 kb on + strand, within MMP_RS01320 at 248.261 kb on - strand, within MMP_RS01320 at 248.272 kb on - strand, within MMP_RS01320 at 248.303 kb on - strand, within MMP_RS01320 at 248.371 kb on - strand at 248.400 kb on - strand at 248.400 kb on - strand at 248.405 kb on - strand at 248.435 kb on - strand, within MMP_RS01325 at 248.469 kb on + strand, within MMP_RS01325 at 248.480 kb on - strand, within MMP_RS01325 at 248.486 kb on - strand, within MMP_RS01325 at 248.793 kb on + strand at 248.973 kb on - strand, within MMP_RS01330 at 248.987 kb on - strand, within MMP_RS01330 at 249.032 kb on - strand, within MMP_RS01330 at 249.033 kb on + strand, within MMP_RS01330 at 249.036 kb on - strand, within MMP_RS01330 at 249.036 kb on - strand, within MMP_RS01330 at 249.090 kb on + strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.095 kb on + strand, within MMP_RS01330 at 249.095 kb on + strand, within MMP_RS01330 at 249.098 kb on - strand, within MMP_RS01330
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 245,339 - MMP_RS01305 0.47 -2.3 245,435 - MMP_RS01305 0.59 -3.2 245,436 + MMP_RS01305 0.59 -4.3 245,436 + MMP_RS01305 0.59 -3.9 245,436 + MMP_RS01305 0.59 -1.6 245,436 + MMP_RS01305 0.59 -2.3 245,509 - MMP_RS01305 0.67 -1.2 245,560 - MMP_RS01305 0.73 -2.2 245,560 - MMP_RS01305 0.73 -1.8 245,561 + MMP_RS01305 0.73 -1.1 245,621 - MMP_RS01305 0.80 -4.0 245,621 - MMP_RS01305 0.80 -1.9 245,621 - MMP_RS01305 0.80 -1.5 245,621 - MMP_RS01305 0.80 -0.1 245,622 + MMP_RS01305 0.80 -0.8 245,625 - MMP_RS01305 0.81 -2.4 245,625 - MMP_RS01305 0.81 -2.4 245,626 + MMP_RS01305 0.81 -3.5 245,626 + MMP_RS01305 0.81 -4.4 245,626 + MMP_RS01305 0.81 -3.2 245,626 + MMP_RS01305 0.81 -1.4 245,701 - MMP_RS01305 0.90 -1.0 245,706 + -1.9 245,706 + -0.7 245,710 + -1.2 245,720 - -4.0 245,754 - -1.8 245,754 - -1.3 245,761 - -0.3 245,822 - -2.4 245,822 - -1.5 245,823 + -1.8 245,861 + MMP_RS01310 0.16 -1.9 245,893 - MMP_RS01310 0.22 -0.4 245,894 + MMP_RS01310 0.22 -1.4 245,894 + MMP_RS01310 0.22 -2.5 245,901 - MMP_RS01310 0.23 -1.6 245,902 + MMP_RS01310 0.23 -2.6 245,902 + MMP_RS01310 0.23 -3.0 245,905 + MMP_RS01310 0.24 -3.0 245,906 - MMP_RS01310 0.24 -3.0 245,907 + MMP_RS01310 0.24 -0.7 245,929 + MMP_RS01310 0.28 -1.8 245,933 - MMP_RS01310 0.29 -1.9 245,934 + MMP_RS01310 0.29 -2.7 245,945 - MMP_RS01310 0.31 -2.7 245,946 + MMP_RS01310 0.31 -3.0 245,971 + MMP_RS01310 0.36 -2.7 245,991 - MMP_RS01310 0.39 -1.2 245,998 + MMP_RS01310 0.40 -1.2 246,052 + MMP_RS01310 0.50 -1.5 246,055 - MMP_RS01310 0.51 -0.8 246,055 - MMP_RS01310 0.51 -2.3 246,055 - MMP_RS01310 0.51 -1.8 246,056 + MMP_RS01310 0.51 -1.1 246,060 + MMP_RS01310 0.51 -1.6 246,124 + MMP_RS01310 0.63 -3.2 246,136 + MMP_RS01310 0.65 -2.2 246,157 - MMP_RS01310 0.69 -1.7 246,233 + MMP_RS01310 0.82 -2.3 246,281 + -0.8 246,300 - -2.1 246,314 - -3.9 246,314 - -0.7 246,359 - -2.8 246,403 + -1.8 246,403 + -2.1 246,403 + -1.7 246,410 - -0.2 246,411 + -1.7 246,416 - -1.8 246,517 + MMP_RS01315 0.10 -1.7 246,520 + MMP_RS01315 0.10 -2.3 246,527 - MMP_RS01315 0.11 -5.1 246,566 + MMP_RS01315 0.13 -1.0 246,604 - MMP_RS01315 0.15 -2.3 246,643 + MMP_RS01315 0.17 -3.2 246,644 - MMP_RS01315 0.17 -4.4 246,702 - MMP_RS01315 0.21 -1.8 246,703 + MMP_RS01315 0.21 -2.1 246,720 - MMP_RS01315 0.22 -5.0 246,720 - MMP_RS01315 0.22 -2.9 246,736 - MMP_RS01315 0.23 -1.9 246,743 - MMP_RS01315 0.23 -1.5 246,751 - MMP_RS01315 0.23 -2.8 246,751 - MMP_RS01315 0.23 -1.2 246,751 - MMP_RS01315 0.23 -3.5 246,752 + MMP_RS01315 0.24 +0.0 246,752 + MMP_RS01315 0.24 -2.1 246,770 - MMP_RS01315 0.25 -2.3 246,770 - MMP_RS01315 0.25 -1.0 246,770 - MMP_RS01315 0.25 -2.9 246,771 + MMP_RS01315 0.25 -2.9 246,771 + MMP_RS01315 0.25 -0.2 246,771 + MMP_RS01315 0.25 -1.4 246,772 - MMP_RS01315 0.25 -2.0 246,772 - MMP_RS01315 0.25 -1.3 246,823 + MMP_RS01315 0.28 -2.0 246,824 - MMP_RS01315 0.28 -5.0 246,824 - MMP_RS01315 0.28 -3.6 246,825 + MMP_RS01315 0.28 -1.6 246,842 - MMP_RS01315 0.29 -0.8 246,942 - MMP_RS01315 0.34 -1.2 246,946 + MMP_RS01315 0.35 -2.0 247,130 - MMP_RS01315 0.45 -1.4 247,193 - MMP_RS01315 0.49 -1.7 247,193 - MMP_RS01315 0.49 -6.2 247,233 + MMP_RS01315 0.51 -3.1 247,235 - MMP_RS01315 0.51 -2.1 247,246 - MMP_RS01315 0.52 -0.3 247,283 - MMP_RS01315 0.54 -1.9 247,307 + MMP_RS01315 0.55 -2.1 247,311 - MMP_RS01315 0.55 -2.0 247,337 + MMP_RS01315 0.57 -0.7 247,337 + MMP_RS01315 0.57 -0.9 247,365 - MMP_RS01315 0.58 -1.0 247,365 - MMP_RS01315 0.58 -3.5 247,431 - MMP_RS01315 0.62 -1.4 247,431 - MMP_RS01315 0.62 -2.5 247,431 - MMP_RS01315 0.62 -2.2 247,432 + MMP_RS01315 0.62 -2.6 247,432 + MMP_RS01315 0.62 -2.7 247,432 + MMP_RS01315 0.62 -0.3 247,432 + MMP_RS01315 0.62 -1.2 247,435 - MMP_RS01315 0.62 -3.7 247,436 + MMP_RS01315 0.62 -4.0 247,436 + MMP_RS01315 0.62 -2.7 247,460 + MMP_RS01315 0.64 -1.5 247,483 - MMP_RS01315 0.65 -0.4 247,486 + MMP_RS01315 0.65 -3.7 247,654 - MMP_RS01315 0.75 -0.5 247,655 + MMP_RS01315 0.75 -1.4 247,757 - MMP_RS01315 0.80 -6.0 247,782 - MMP_RS01315 0.82 -2.4 247,786 - MMP_RS01315 0.82 -1.6 247,786 - MMP_RS01315 0.82 -2.2 247,790 - MMP_RS01315 0.82 -0.7 247,791 + MMP_RS01315 0.82 -2.5 247,816 - MMP_RS01315 0.84 -1.4 247,819 - MMP_RS01315 0.84 -2.4 247,819 - MMP_RS01315 0.84 -2.1 247,820 + MMP_RS01315 0.84 -1.3 247,822 - MMP_RS01315 0.84 -1.7 247,822 - MMP_RS01315 0.84 -1.7 247,822 - MMP_RS01315 0.84 -1.5 247,822 - MMP_RS01315 0.84 -0.8 247,822 - MMP_RS01315 0.84 -4.0 247,823 + MMP_RS01315 0.84 +0.1 247,823 + MMP_RS01315 0.84 -2.5 247,823 + MMP_RS01315 0.84 -2.1 247,823 + MMP_RS01315 0.84 -1.5 247,823 + MMP_RS01315 0.84 -1.6 247,852 - MMP_RS01315 0.86 -1.8 247,852 - MMP_RS01315 0.86 -4.4 247,852 - MMP_RS01315 0.86 -1.1 247,853 + MMP_RS01315 0.86 -3.3 247,904 - MMP_RS01315 0.89 -0.1 247,905 + MMP_RS01315 0.89 -2.2 247,908 - MMP_RS01315 0.89 -0.3 247,909 + MMP_RS01315 0.89 -1.1 247,925 + -0.7 247,927 - -1.8 247,927 - -0.0 247,929 - +0.5 247,929 - +0.9 247,929 - +1.2 247,930 + -0.0 247,931 - -0.5 247,931 - -2.2 247,931 - +0.5 247,932 + -0.6 247,932 + +1.2 247,992 - +2.0 248,018 - +0.2 248,047 - +2.5 248,081 - +1.4 248,143 - MMP_RS01320 0.15 +0.9 248,218 - MMP_RS01320 0.43 +1.4 248,259 + MMP_RS01320 0.58 +1.8 248,261 - MMP_RS01320 0.59 +1.5 248,272 - MMP_RS01320 0.63 -2.1 248,303 - MMP_RS01320 0.74 +0.6 248,371 - +2.3 248,400 - -1.6 248,400 - -4.9 248,405 - -2.7 248,435 - MMP_RS01325 0.14 -3.1 248,469 + MMP_RS01325 0.23 -3.4 248,480 - MMP_RS01325 0.26 +0.4 248,486 - MMP_RS01325 0.27 -3.3 248,793 + -3.0 248,973 - MMP_RS01330 0.22 -0.1 248,987 - MMP_RS01330 0.23 -2.3 249,032 - MMP_RS01330 0.28 +1.2 249,033 + MMP_RS01330 0.28 -2.8 249,036 - MMP_RS01330 0.28 +1.7 249,036 - MMP_RS01330 0.28 +1.5 249,090 + MMP_RS01330 0.33 -2.9 249,094 - MMP_RS01330 0.34 +0.9 249,094 - MMP_RS01330 0.34 -1.5 249,094 - MMP_RS01330 0.34 +0.4 249,095 + MMP_RS01330 0.34 -1.6 249,095 + MMP_RS01330 0.34 -2.8 249,098 - MMP_RS01330 0.34 +1.0
Or see this region's nucleotide sequence