Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01285 and MMP_RS01290 are separated by 33 nucleotides MMP_RS01290 and MMP_RS01295 overlap by 23 nucleotides MMP_RS01295 and MMP_RS01300 are separated by 51 nucleotides MMP_RS01300 and MMP_RS01305 are separated by 1 nucleotides
MMP_RS01285: MMP_RS01285 - hypothetical protein, at 242,635 to 243,528
_RS01285
MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960
_RS01290
MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393
_RS01295
MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930
_RS01300
MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789
_RS01305
Position (kb) 243
244
245 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 243.008 kb on - strand, within MMP_RS01285 at 243.009 kb on + strand, within MMP_RS01285 at 243.011 kb on - strand, within MMP_RS01285 at 243.015 kb on - strand, within MMP_RS01285 at 243.072 kb on + strand, within MMP_RS01285 at 243.114 kb on + strand, within MMP_RS01285 at 243.114 kb on + strand, within MMP_RS01285 at 243.188 kb on - strand, within MMP_RS01285 at 243.239 kb on - strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.393 kb on + strand, within MMP_RS01285 at 243.437 kb on + strand, within MMP_RS01285 at 243.439 kb on + strand at 243.442 kb on + strand at 243.532 kb on + strand at 243.558 kb on - strand at 243.629 kb on - strand, within MMP_RS01290 at 243.843 kb on - strand, within MMP_RS01290 at 243.843 kb on - strand, within MMP_RS01290 at 243.844 kb on + strand, within MMP_RS01290 at 243.844 kb on + strand, within MMP_RS01290 at 243.845 kb on - strand, within MMP_RS01290 at 243.845 kb on - strand, within MMP_RS01290 at 243.846 kb on + strand, within MMP_RS01290 at 243.846 kb on + strand, within MMP_RS01290 at 243.849 kb on - strand, within MMP_RS01290 at 243.850 kb on + strand, within MMP_RS01290 at 243.855 kb on - strand, within MMP_RS01290 at 243.870 kb on + strand, within MMP_RS01290 at 243.870 kb on + strand, within MMP_RS01290 at 243.877 kb on - strand, within MMP_RS01290 at 243.878 kb on + strand, within MMP_RS01290 at 243.878 kb on + strand, within MMP_RS01290 at 243.879 kb on - strand, within MMP_RS01290 at 243.879 kb on - strand, within MMP_RS01290 at 243.884 kb on + strand, within MMP_RS01290 at 243.884 kb on + strand, within MMP_RS01290 at 243.999 kb on - strand, within MMP_RS01295 at 244.000 kb on + strand, within MMP_RS01295 at 244.131 kb on + strand, within MMP_RS01295 at 244.185 kb on + strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.191 kb on - strand, within MMP_RS01295 at 244.214 kb on + strand, within MMP_RS01295 at 244.229 kb on + strand, within MMP_RS01295 at 244.288 kb on - strand, within MMP_RS01295 at 244.313 kb on + strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.381 kb on - strand at 244.407 kb on + strand at 244.414 kb on + strand at 244.439 kb on - strand at 244.441 kb on - strand at 244.471 kb on - strand at 244.472 kb on + strand at 244.491 kb on - strand at 244.534 kb on + strand, within MMP_RS01300 at 244.588 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.607 kb on + strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.667 kb on - strand, within MMP_RS01300 at 244.733 kb on + strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.742 kb on + strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.799 kb on + strand, within MMP_RS01300 at 244.980 kb on - strand at 245.022 kb on - strand, within MMP_RS01305 at 245.133 kb on - strand, within MMP_RS01305 at 245.151 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.203 kb on + strand, within MMP_RS01305 at 245.203 kb on + strand, within MMP_RS01305 at 245.242 kb on - strand, within MMP_RS01305 at 245.248 kb on + strand, within MMP_RS01305 at 245.253 kb on + strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.267 kb on + strand, within MMP_RS01305 at 245.271 kb on - strand, within MMP_RS01305 at 245.274 kb on - strand, within MMP_RS01305 at 245.293 kb on + strand, within MMP_RS01305 at 245.297 kb on - strand, within MMP_RS01305 at 245.298 kb on + strand, within MMP_RS01305 at 245.298 kb on + strand, within MMP_RS01305 at 245.339 kb on - strand, within MMP_RS01305
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 243,008 - MMP_RS01285 0.42 -1.2 243,009 + MMP_RS01285 0.42 -2.1 243,011 - MMP_RS01285 0.42 -2.4 243,015 - MMP_RS01285 0.43 -1.0 243,072 + MMP_RS01285 0.49 -1.6 243,114 + MMP_RS01285 0.54 -1.7 243,114 + MMP_RS01285 0.54 -1.6 243,188 - MMP_RS01285 0.62 -1.2 243,239 - MMP_RS01285 0.68 -2.3 243,292 + MMP_RS01285 0.73 -0.8 243,292 + MMP_RS01285 0.73 -4.7 243,292 + MMP_RS01285 0.73 -0.9 243,393 + MMP_RS01285 0.85 -1.9 243,437 + MMP_RS01285 0.90 -3.0 243,439 + -2.2 243,442 + -5.9 243,532 + +0.5 243,558 - -2.1 243,629 - MMP_RS01290 0.17 -2.7 243,843 - MMP_RS01290 0.70 -3.0 243,843 - MMP_RS01290 0.70 -2.0 243,844 + MMP_RS01290 0.71 -0.5 243,844 + MMP_RS01290 0.71 -3.6 243,845 - MMP_RS01290 0.71 -3.1 243,845 - MMP_RS01290 0.71 -2.5 243,846 + MMP_RS01290 0.71 -1.2 243,846 + MMP_RS01290 0.71 -1.2 243,849 - MMP_RS01290 0.72 -1.5 243,850 + MMP_RS01290 0.72 -1.3 243,855 - MMP_RS01290 0.73 -2.6 243,870 + MMP_RS01290 0.77 -3.1 243,870 + MMP_RS01290 0.77 -1.7 243,877 - MMP_RS01290 0.79 -1.4 243,878 + MMP_RS01290 0.79 -5.8 243,878 + MMP_RS01290 0.79 -2.2 243,879 - MMP_RS01290 0.79 +0.5 243,879 - MMP_RS01290 0.79 -1.6 243,884 + MMP_RS01290 0.81 -2.7 243,884 + MMP_RS01290 0.81 -2.1 243,999 - MMP_RS01295 0.13 -3.7 244,000 + MMP_RS01295 0.14 -2.1 244,131 + MMP_RS01295 0.42 -3.1 244,185 + MMP_RS01295 0.54 -1.4 244,189 - MMP_RS01295 0.55 -1.2 244,189 - MMP_RS01295 0.55 -2.0 244,190 + MMP_RS01295 0.55 -3.0 244,190 + MMP_RS01295 0.55 -4.5 244,190 + MMP_RS01295 0.55 -1.6 244,191 - MMP_RS01295 0.55 -2.3 244,214 + MMP_RS01295 0.61 -2.2 244,229 + MMP_RS01295 0.64 -1.2 244,288 - MMP_RS01295 0.77 -2.1 244,313 + MMP_RS01295 0.82 -1.9 244,336 - MMP_RS01295 0.87 -3.5 244,336 - MMP_RS01295 0.87 -0.9 244,336 - MMP_RS01295 0.87 -4.5 244,336 - MMP_RS01295 0.87 -4.0 244,336 - MMP_RS01295 0.87 -3.5 244,337 + MMP_RS01295 0.88 -2.8 244,337 + MMP_RS01295 0.88 -0.5 244,381 - +0.4 244,407 + -0.6 244,414 + +0.9 244,439 - -0.4 244,441 - -0.1 244,471 - +1.3 244,472 + +1.3 244,491 - +0.4 244,534 + MMP_RS01300 0.18 -1.9 244,588 - MMP_RS01300 0.29 +1.3 244,606 - MMP_RS01300 0.33 -0.5 244,606 - MMP_RS01300 0.33 +1.3 244,606 - MMP_RS01300 0.33 +1.8 244,606 - MMP_RS01300 0.33 +0.9 244,606 - MMP_RS01300 0.33 +0.7 244,606 - MMP_RS01300 0.33 +0.8 244,607 + MMP_RS01300 0.33 -2.7 244,610 - MMP_RS01300 0.34 -0.2 244,610 - MMP_RS01300 0.34 -1.5 244,610 - MMP_RS01300 0.34 +0.4 244,610 - MMP_RS01300 0.34 -0.8 244,610 - MMP_RS01300 0.34 +0.0 244,610 - MMP_RS01300 0.34 +0.7 244,610 - MMP_RS01300 0.34 -2.2 244,610 - MMP_RS01300 0.34 -0.3 244,611 + MMP_RS01300 0.34 +2.1 244,611 + MMP_RS01300 0.34 -0.2 244,611 + MMP_RS01300 0.34 +0.9 244,612 - MMP_RS01300 0.34 -0.6 244,612 - MMP_RS01300 0.34 -0.8 244,612 - MMP_RS01300 0.34 -0.1 244,612 - MMP_RS01300 0.34 -2.5 244,612 - MMP_RS01300 0.34 -0.7 244,613 + MMP_RS01300 0.35 +1.3 244,613 + MMP_RS01300 0.35 -1.1 244,613 + MMP_RS01300 0.35 -0.8 244,614 - MMP_RS01300 0.35 +1.3 244,614 - MMP_RS01300 0.35 -0.6 244,615 + MMP_RS01300 0.35 -1.3 244,615 + MMP_RS01300 0.35 +0.3 244,623 + MMP_RS01300 0.37 -1.4 244,623 + MMP_RS01300 0.37 +0.3 244,653 - MMP_RS01300 0.43 -2.7 244,653 - MMP_RS01300 0.43 -0.5 244,664 + MMP_RS01300 0.45 -0.0 244,664 + MMP_RS01300 0.45 -1.5 244,667 - MMP_RS01300 0.46 -1.4 244,733 + MMP_RS01300 0.59 +1.1 244,735 - MMP_RS01300 0.60 +0.0 244,735 - MMP_RS01300 0.60 -0.3 244,742 + MMP_RS01300 0.61 -0.9 244,798 - MMP_RS01300 0.73 -1.0 244,798 - MMP_RS01300 0.73 -1.9 244,799 + MMP_RS01300 0.73 +2.3 244,980 - -2.0 245,022 - MMP_RS01305 0.10 -2.7 245,133 - MMP_RS01305 0.23 -0.8 245,151 - MMP_RS01305 0.26 -2.9 245,154 - MMP_RS01305 0.26 -0.4 245,154 - MMP_RS01305 0.26 -2.5 245,154 - MMP_RS01305 0.26 -1.7 245,155 + MMP_RS01305 0.26 -2.5 245,155 + MMP_RS01305 0.26 -0.7 245,155 + MMP_RS01305 0.26 -2.4 245,155 + MMP_RS01305 0.26 -2.8 245,203 + MMP_RS01305 0.32 -2.1 245,203 + MMP_RS01305 0.32 -2.0 245,242 - MMP_RS01305 0.36 -1.6 245,248 + MMP_RS01305 0.37 -1.3 245,253 + MMP_RS01305 0.37 -2.8 245,266 - MMP_RS01305 0.39 -0.3 245,266 - MMP_RS01305 0.39 -2.2 245,266 - MMP_RS01305 0.39 -3.5 245,266 - MMP_RS01305 0.39 -2.9 245,267 + MMP_RS01305 0.39 -5.6 245,271 - MMP_RS01305 0.40 -3.5 245,274 - MMP_RS01305 0.40 -3.5 245,293 + MMP_RS01305 0.42 -2.0 245,297 - MMP_RS01305 0.43 -1.9 245,298 + MMP_RS01305 0.43 -1.8 245,298 + MMP_RS01305 0.43 -1.9 245,339 - MMP_RS01305 0.47 -2.3
Or see this region's nucleotide sequence