Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01270 and MMP_RS01275 are separated by 1 nucleotides MMP_RS01275 and MMP_RS01280 are separated by 125 nucleotides MMP_RS01280 and MMP_RS01285 overlap by 1 nucleotides MMP_RS01285 and MMP_RS01290 are separated by 33 nucleotides
MMP_RS01270: MMP_RS01270 - prepilin peptidase, at 239,930 to 240,970
_RS01270
MMP_RS01275: MMP_RS01275 - class III signal peptide-containing protein, at 240,972 to 241,361
_RS01275
MMP_RS01280: MMP_RS01280 - DUF515 domain-containing protein, at 241,487 to 242,635
_RS01280
MMP_RS01285: MMP_RS01285 - hypothetical protein, at 242,635 to 243,528
_RS01285
MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960
_RS01290
Position (kb) 241
242
243 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 240.510 kb on + strand, within MMP_RS01270 at 240.514 kb on + strand, within MMP_RS01270 at 240.566 kb on - strand, within MMP_RS01270 at 240.601 kb on + strand, within MMP_RS01270 at 240.666 kb on - strand, within MMP_RS01270 at 240.683 kb on + strand, within MMP_RS01270 at 240.688 kb on + strand, within MMP_RS01270 at 240.705 kb on - strand, within MMP_RS01270 at 240.724 kb on - strand, within MMP_RS01270 at 240.884 kb on + strand at 240.884 kb on + strand at 240.934 kb on + strand at 240.969 kb on + strand at 241.047 kb on + strand, within MMP_RS01275 at 241.221 kb on + strand, within MMP_RS01275 at 241.232 kb on - strand, within MMP_RS01275 at 241.235 kb on + strand, within MMP_RS01275 at 241.243 kb on + strand, within MMP_RS01275 at 241.244 kb on - strand, within MMP_RS01275 at 241.383 kb on + strand at 241.400 kb on - strand at 241.407 kb on - strand at 241.408 kb on + strand at 241.414 kb on + strand at 241.429 kb on - strand at 241.429 kb on - strand at 241.429 kb on - strand at 241.430 kb on + strand at 241.430 kb on + strand at 241.431 kb on - strand at 241.435 kb on - strand at 241.451 kb on - strand at 241.465 kb on + strand at 241.486 kb on - strand at 241.502 kb on - strand at 241.502 kb on - strand at 241.511 kb on + strand at 241.691 kb on + strand, within MMP_RS01280 at 241.742 kb on - strand, within MMP_RS01280 at 241.743 kb on + strand, within MMP_RS01280 at 241.743 kb on + strand, within MMP_RS01280 at 241.755 kb on - strand, within MMP_RS01280 at 241.822 kb on + strand, within MMP_RS01280 at 241.829 kb on - strand, within MMP_RS01280 at 241.829 kb on - strand, within MMP_RS01280 at 241.832 kb on + strand, within MMP_RS01280 at 241.862 kb on + strand, within MMP_RS01280 at 241.862 kb on + strand, within MMP_RS01280 at 241.866 kb on + strand, within MMP_RS01280 at 241.874 kb on - strand, within MMP_RS01280 at 242.036 kb on - strand, within MMP_RS01280 at 242.042 kb on - strand, within MMP_RS01280 at 242.043 kb on + strand, within MMP_RS01280 at 242.043 kb on + strand, within MMP_RS01280 at 242.067 kb on + strand, within MMP_RS01280 at 242.067 kb on + strand, within MMP_RS01280 at 242.152 kb on - strand, within MMP_RS01280 at 242.230 kb on + strand, within MMP_RS01280 at 242.309 kb on - strand, within MMP_RS01280 at 242.390 kb on - strand, within MMP_RS01280 at 242.446 kb on - strand, within MMP_RS01280 at 242.495 kb on + strand, within MMP_RS01280 at 242.518 kb on + strand, within MMP_RS01280 at 242.547 kb on - strand at 242.547 kb on - strand at 242.548 kb on + strand at 242.606 kb on - strand at 242.630 kb on + strand at 242.652 kb on + strand at 242.656 kb on - strand at 242.656 kb on - strand at 242.721 kb on - strand at 242.722 kb on + strand at 242.734 kb on - strand, within MMP_RS01285 at 242.758 kb on + strand, within MMP_RS01285 at 242.892 kb on - strand, within MMP_RS01285 at 243.008 kb on - strand, within MMP_RS01285 at 243.009 kb on + strand, within MMP_RS01285 at 243.011 kb on - strand, within MMP_RS01285 at 243.015 kb on - strand, within MMP_RS01285 at 243.072 kb on + strand, within MMP_RS01285 at 243.114 kb on + strand, within MMP_RS01285 at 243.114 kb on + strand, within MMP_RS01285 at 243.188 kb on - strand, within MMP_RS01285 at 243.239 kb on - strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.393 kb on + strand, within MMP_RS01285 at 243.437 kb on + strand, within MMP_RS01285 at 243.439 kb on + strand at 243.442 kb on + strand at 243.532 kb on + strand at 243.558 kb on - strand at 243.629 kb on - strand, within MMP_RS01290
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 240,510 + MMP_RS01270 0.56 -0.5 240,514 + MMP_RS01270 0.56 -2.2 240,566 - MMP_RS01270 0.61 -2.9 240,601 + MMP_RS01270 0.64 -1.7 240,666 - MMP_RS01270 0.71 -2.3 240,683 + MMP_RS01270 0.72 -0.9 240,688 + MMP_RS01270 0.73 -2.2 240,705 - MMP_RS01270 0.74 -3.7 240,724 - MMP_RS01270 0.76 -0.2 240,884 + -2.7 240,884 + -3.7 240,934 + -3.0 240,969 + -2.5 241,047 + MMP_RS01275 0.19 -2.0 241,221 + MMP_RS01275 0.64 -1.8 241,232 - MMP_RS01275 0.67 -1.9 241,235 + MMP_RS01275 0.67 -3.0 241,243 + MMP_RS01275 0.69 -0.9 241,244 - MMP_RS01275 0.70 -2.3 241,383 + -0.1 241,400 - +0.2 241,407 - -2.3 241,408 + -0.5 241,414 + -0.5 241,429 - -2.5 241,429 - -1.5 241,429 - -1.6 241,430 + -1.6 241,430 + -0.8 241,431 - -1.6 241,435 - +0.1 241,451 - -0.8 241,465 + -0.7 241,486 - -4.6 241,502 - -1.3 241,502 - -3.6 241,511 + -1.5 241,691 + MMP_RS01280 0.18 -2.0 241,742 - MMP_RS01280 0.22 -2.3 241,743 + MMP_RS01280 0.22 -2.2 241,743 + MMP_RS01280 0.22 -1.6 241,755 - MMP_RS01280 0.23 -0.9 241,822 + MMP_RS01280 0.29 -2.0 241,829 - MMP_RS01280 0.30 -1.0 241,829 - MMP_RS01280 0.30 -4.8 241,832 + MMP_RS01280 0.30 -3.7 241,862 + MMP_RS01280 0.33 -1.0 241,862 + MMP_RS01280 0.33 -3.9 241,866 + MMP_RS01280 0.33 -1.1 241,874 - MMP_RS01280 0.34 -2.6 242,036 - MMP_RS01280 0.48 -2.2 242,042 - MMP_RS01280 0.48 -2.1 242,043 + MMP_RS01280 0.48 -1.6 242,043 + MMP_RS01280 0.48 -2.3 242,067 + MMP_RS01280 0.50 -2.6 242,067 + MMP_RS01280 0.50 -0.1 242,152 - MMP_RS01280 0.58 -1.7 242,230 + MMP_RS01280 0.65 -1.0 242,309 - MMP_RS01280 0.72 -1.7 242,390 - MMP_RS01280 0.79 -1.5 242,446 - MMP_RS01280 0.83 -2.8 242,495 + MMP_RS01280 0.88 -1.2 242,518 + MMP_RS01280 0.90 -2.0 242,547 - -1.0 242,547 - -5.2 242,548 + -1.0 242,606 - +1.5 242,630 + -2.8 242,652 + -1.8 242,656 - -3.0 242,656 - -1.0 242,721 - -6.5 242,722 + -0.5 242,734 - MMP_RS01285 0.11 -3.9 242,758 + MMP_RS01285 0.14 -5.6 242,892 - MMP_RS01285 0.29 -1.5 243,008 - MMP_RS01285 0.42 -1.2 243,009 + MMP_RS01285 0.42 -2.1 243,011 - MMP_RS01285 0.42 -2.4 243,015 - MMP_RS01285 0.43 -1.0 243,072 + MMP_RS01285 0.49 -1.6 243,114 + MMP_RS01285 0.54 -1.7 243,114 + MMP_RS01285 0.54 -1.6 243,188 - MMP_RS01285 0.62 -1.2 243,239 - MMP_RS01285 0.68 -2.3 243,292 + MMP_RS01285 0.73 -0.8 243,292 + MMP_RS01285 0.73 -4.7 243,292 + MMP_RS01285 0.73 -0.9 243,393 + MMP_RS01285 0.85 -1.9 243,437 + MMP_RS01285 0.90 -3.0 243,439 + -2.2 243,442 + -5.9 243,532 + +0.5 243,558 - -2.1 243,629 - MMP_RS01290 0.17 -2.7
Or see this region's nucleotide sequence