Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01090 and MMP_RS01095 overlap by 8 nucleotides MMP_RS01095 and MMP_RS01100 overlap by 1 nucleotides MMP_RS01100 and MMP_RS01105 are separated by 29 nucleotides MMP_RS01105 and MMP_RS01110 are separated by 16 nucleotides
MMP_RS01090: MMP_RS01090 - ABC transporter substrate-binding protein, at 204,032 to 205,093
_RS01090
MMP_RS01095: MMP_RS01095 - iron ABC transporter permease, at 205,086 to 206,036
_RS01095
MMP_RS01100: MMP_RS01100 - ABC transporter ATP-binding protein, at 206,036 to 206,818
_RS01100
MMP_RS01105: MMP_RS01105 - hypothetical protein, at 206,848 to 207,624
_RS01105
MMP_RS01110: MMP_RS01110 - FmdE family protein, at 207,641 to 208,225
_RS01110
Position (kb) 206
207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 205.051 kb on + strand at 205.054 kb on - strand at 205.155 kb on - strand at 205.155 kb on - strand at 205.174 kb on - strand at 205.319 kb on - strand, within MMP_RS01095 at 205.359 kb on + strand, within MMP_RS01095 at 205.434 kb on - strand, within MMP_RS01095 at 205.443 kb on - strand, within MMP_RS01095 at 205.970 kb on - strand at 206.015 kb on + strand at 206.034 kb on - strand at 206.095 kb on - strand at 206.102 kb on + strand at 206.126 kb on + strand, within MMP_RS01100 at 206.128 kb on + strand, within MMP_RS01100 at 206.761 kb on - strand at 206.803 kb on + strand at 206.948 kb on - strand, within MMP_RS01105 at 207.053 kb on - strand, within MMP_RS01105 at 207.053 kb on - strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.064 kb on + strand, within MMP_RS01105 at 207.365 kb on - strand, within MMP_RS01105 at 207.383 kb on - strand, within MMP_RS01105 at 207.390 kb on - strand, within MMP_RS01105 at 207.390 kb on - strand, within MMP_RS01105 at 207.652 kb on + strand at 207.817 kb on - strand, within MMP_RS01110
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 205,051 + -0.5 205,054 - +1.0 205,155 - -0.5 205,155 - -0.1 205,174 - +0.0 205,319 - MMP_RS01095 0.25 +2.0 205,359 + MMP_RS01095 0.29 +0.7 205,434 - MMP_RS01095 0.37 +1.5 205,443 - MMP_RS01095 0.38 -0.6 205,970 - -0.3 206,015 + -1.0 206,034 - +1.3 206,095 - +1.1 206,102 + +1.0 206,126 + MMP_RS01100 0.11 -2.5 206,128 + MMP_RS01100 0.12 -1.7 206,761 - +0.4 206,803 + -2.1 206,948 - MMP_RS01105 0.13 -0.1 207,053 - MMP_RS01105 0.26 -0.8 207,053 - MMP_RS01105 0.26 -0.9 207,054 + MMP_RS01105 0.27 +1.9 207,054 + MMP_RS01105 0.27 -0.5 207,054 + MMP_RS01105 0.27 +0.4 207,064 + MMP_RS01105 0.28 -1.4 207,365 - MMP_RS01105 0.67 -0.6 207,383 - MMP_RS01105 0.69 +0.5 207,390 - MMP_RS01105 0.70 +0.5 207,390 - MMP_RS01105 0.70 -0.7 207,652 + +1.0 207,817 - MMP_RS01110 0.30 -1.5
Or see this region's nucleotide sequence