Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01080 and MMP_RS01085 are separated by 202 nucleotides MMP_RS01085 and MMP_RS01090 are separated by 182 nucleotides
MMP_RS01080: MMP_RS01080 - DUF2202 domain-containing protein, at 202,505 to 203,332
_RS01080
MMP_RS01085: MMP_RS01085 - hypothetical protein, at 203,535 to 203,849
_RS01085
MMP_RS01090: MMP_RS01090 - ABC transporter substrate-binding protein, at 204,032 to 205,093
_RS01090
Position (kb) 203
204 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 202.554 kb on - strand at 202.760 kb on - strand, within MMP_RS01080 at 202.771 kb on + strand, within MMP_RS01080 at 202.771 kb on + strand, within MMP_RS01080 at 202.800 kb on - strand, within MMP_RS01080 at 202.814 kb on + strand, within MMP_RS01080 at 202.846 kb on + strand, within MMP_RS01080 at 202.852 kb on + strand, within MMP_RS01080 at 203.169 kb on + strand, within MMP_RS01080 at 203.385 kb on + strand at 203.430 kb on - strand at 203.443 kb on + strand at 203.532 kb on - strand at 203.553 kb on + strand at 203.615 kb on + strand, within MMP_RS01085 at 203.909 kb on - strand at 204.027 kb on - strand at 204.193 kb on + strand, within MMP_RS01090 at 204.366 kb on - strand, within MMP_RS01090 at 204.476 kb on + strand, within MMP_RS01090 at 204.476 kb on + strand, within MMP_RS01090 at 204.480 kb on + strand, within MMP_RS01090 at 204.485 kb on + strand, within MMP_RS01090 at 204.527 kb on - strand, within MMP_RS01090 at 204.562 kb on - strand, within MMP_RS01090 at 204.562 kb on - strand, within MMP_RS01090 at 204.577 kb on + strand, within MMP_RS01090 at 204.694 kb on - strand, within MMP_RS01090 at 204.694 kb on - strand, within MMP_RS01090 at 204.695 kb on + strand, within MMP_RS01090 at 204.790 kb on + strand, within MMP_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 202,554 - +0.5 202,760 - MMP_RS01080 0.31 -0.2 202,771 + MMP_RS01080 0.32 -0.6 202,771 + MMP_RS01080 0.32 +0.6 202,800 - MMP_RS01080 0.36 +1.7 202,814 + MMP_RS01080 0.37 +0.9 202,846 + MMP_RS01080 0.41 -4.4 202,852 + MMP_RS01080 0.42 +0.9 203,169 + MMP_RS01080 0.80 +0.6 203,385 + -0.5 203,430 - +2.2 203,443 + -0.2 203,532 - +0.4 203,553 + +1.5 203,615 + MMP_RS01085 0.25 -3.4 203,909 - +1.0 204,027 - -0.7 204,193 + MMP_RS01090 0.15 +1.3 204,366 - MMP_RS01090 0.31 +0.3 204,476 + MMP_RS01090 0.42 -1.3 204,476 + MMP_RS01090 0.42 -1.5 204,480 + MMP_RS01090 0.42 +0.7 204,485 + MMP_RS01090 0.43 +1.3 204,527 - MMP_RS01090 0.47 +0.6 204,562 - MMP_RS01090 0.50 +1.3 204,562 - MMP_RS01090 0.50 +0.3 204,577 + MMP_RS01090 0.51 +0.7 204,694 - MMP_RS01090 0.62 +0.2 204,694 - MMP_RS01090 0.62 +3.4 204,695 + MMP_RS01090 0.62 +0.1 204,790 + MMP_RS01090 0.71 +0.4
Or see this region's nucleotide sequence