Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01070 and MMP_RS01075 are separated by 84 nucleotides MMP_RS01075 and MMP_RS01080 are separated by 281 nucleotides MMP_RS01080 and MMP_RS01085 are separated by 202 nucleotides MMP_RS01085 and MMP_RS01090 are separated by 182 nucleotides
MMP_RS01070: MMP_RS01070 - hypothetical protein, at 200,856 to 201,914
_RS01070
MMP_RS01075: MMP_RS01075 - hypothetical protein, at 201,999 to 202,223
_RS01075
MMP_RS01080: MMP_RS01080 - DUF2202 domain-containing protein, at 202,505 to 203,332
_RS01080
MMP_RS01085: MMP_RS01085 - hypothetical protein, at 203,535 to 203,849
_RS01085
MMP_RS01090: MMP_RS01090 - ABC transporter substrate-binding protein, at 204,032 to 205,093
_RS01090
Position (kb) 202
203
204 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 201.559 kb on + strand, within MMP_RS01070 at 201.583 kb on - strand, within MMP_RS01070 at 201.583 kb on - strand, within MMP_RS01070 at 201.583 kb on - strand, within MMP_RS01070 at 201.588 kb on - strand, within MMP_RS01070 at 201.589 kb on + strand, within MMP_RS01070 at 201.601 kb on + strand, within MMP_RS01070 at 201.620 kb on - strand, within MMP_RS01070 at 201.656 kb on - strand, within MMP_RS01070 at 201.657 kb on + strand, within MMP_RS01070 at 201.658 kb on - strand, within MMP_RS01070 at 201.659 kb on + strand, within MMP_RS01070 at 201.659 kb on + strand, within MMP_RS01070 at 201.659 kb on + strand, within MMP_RS01070 at 201.665 kb on + strand, within MMP_RS01070 at 201.795 kb on - strand, within MMP_RS01070 at 201.888 kb on - strand at 201.889 kb on + strand at 201.894 kb on + strand at 201.895 kb on - strand at 201.933 kb on - strand at 201.938 kb on + strand at 202.195 kb on - strand, within MMP_RS01075 at 202.200 kb on + strand, within MMP_RS01075 at 202.204 kb on - strand at 202.384 kb on + strand at 202.394 kb on - strand at 202.428 kb on - strand at 202.428 kb on - strand at 202.464 kb on - strand at 202.465 kb on + strand at 202.466 kb on - strand at 202.466 kb on - strand at 202.466 kb on - strand at 202.467 kb on + strand at 202.488 kb on + strand at 202.488 kb on + strand at 202.491 kb on + strand at 202.494 kb on - strand at 202.495 kb on + strand at 202.554 kb on - strand at 202.760 kb on - strand, within MMP_RS01080 at 202.771 kb on + strand, within MMP_RS01080 at 202.771 kb on + strand, within MMP_RS01080 at 202.800 kb on - strand, within MMP_RS01080 at 202.814 kb on + strand, within MMP_RS01080 at 202.846 kb on + strand, within MMP_RS01080 at 202.852 kb on + strand, within MMP_RS01080 at 203.169 kb on + strand, within MMP_RS01080 at 203.385 kb on + strand at 203.430 kb on - strand at 203.443 kb on + strand at 203.532 kb on - strand at 203.553 kb on + strand at 203.615 kb on + strand, within MMP_RS01085 at 203.909 kb on - strand at 204.027 kb on - strand at 204.193 kb on + strand, within MMP_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 201,559 + MMP_RS01070 0.66 +0.7 201,583 - MMP_RS01070 0.69 -0.6 201,583 - MMP_RS01070 0.69 -4.3 201,583 - MMP_RS01070 0.69 -0.6 201,588 - MMP_RS01070 0.69 +1.2 201,589 + MMP_RS01070 0.69 +1.5 201,601 + MMP_RS01070 0.70 +2.3 201,620 - MMP_RS01070 0.72 +0.6 201,656 - MMP_RS01070 0.76 +0.8 201,657 + MMP_RS01070 0.76 +1.6 201,658 - MMP_RS01070 0.76 +0.2 201,659 + MMP_RS01070 0.76 -1.8 201,659 + MMP_RS01070 0.76 +1.0 201,659 + MMP_RS01070 0.76 +0.6 201,665 + MMP_RS01070 0.76 -1.1 201,795 - MMP_RS01070 0.89 +1.1 201,888 - -5.2 201,889 + -0.1 201,894 + +1.1 201,895 - -0.8 201,933 - -0.2 201,938 + +1.2 202,195 - MMP_RS01075 0.87 -4.9 202,200 + MMP_RS01075 0.89 +1.0 202,204 - +0.6 202,384 + +2.0 202,394 - -0.9 202,428 - -1.0 202,428 - +0.8 202,464 - +0.2 202,465 + +2.1 202,466 - +1.3 202,466 - +0.5 202,466 - +0.1 202,467 + +1.1 202,488 + -4.2 202,488 + -1.0 202,491 + +0.8 202,494 - -0.3 202,495 + -0.5 202,554 - +0.5 202,760 - MMP_RS01080 0.31 -0.2 202,771 + MMP_RS01080 0.32 -0.6 202,771 + MMP_RS01080 0.32 +0.6 202,800 - MMP_RS01080 0.36 +1.7 202,814 + MMP_RS01080 0.37 +0.9 202,846 + MMP_RS01080 0.41 -4.4 202,852 + MMP_RS01080 0.42 +0.9 203,169 + MMP_RS01080 0.80 +0.6 203,385 + -0.5 203,430 - +2.2 203,443 + -0.2 203,532 - +0.4 203,553 + +1.5 203,615 + MMP_RS01085 0.25 -3.4 203,909 - +1.0 204,027 - -0.7 204,193 + MMP_RS01090 0.15 +1.3
Or see this region's nucleotide sequence