Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00950 and MMP_RS00955 are separated by 21 nucleotides MMP_RS00955 and MMP_RS00960 are separated by 3 nucleotides MMP_RS00960 and MMP_RS00965 are separated by 2 nucleotides
MMP_RS00950: MMP_RS00950 - site-2 protease family protein, at 177,372 to 178,499
_RS00950
MMP_RS00955: MMP_RS00955 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 178,521 to 179,378
_RS00955
MMP_RS00960: MMP_RS00960 - iron export ABC transporter permease subunit FetB, at 179,382 to 180,128
_RS00960
MMP_RS00965: MMP_RS00965 - hypothetical protein, at 180,131 to 180,415
_RS00965
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 177.737 kb on + strand, within MMP_RS00950 at 178.056 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.181 kb on + strand, within MMP_RS00950 at 178.242 kb on + strand, within MMP_RS00950 at 178.270 kb on - strand, within MMP_RS00950 at 178.417 kb on - strand at 178.449 kb on + strand at 178.451 kb on + strand at 178.472 kb on + strand at 178.604 kb on - strand at 178.670 kb on + strand, within MMP_RS00955 at 178.758 kb on - strand, within MMP_RS00955 at 179.123 kb on - strand, within MMP_RS00955 at 179.124 kb on + strand, within MMP_RS00955 at 179.126 kb on - strand, within MMP_RS00955 at 179.126 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.146 kb on + strand, within MMP_RS00955 at 179.229 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.285 kb on + strand, within MMP_RS00955 at 179.386 kb on - strand at 179.438 kb on + strand at 179.573 kb on - strand, within MMP_RS00960 at 179.740 kb on + strand, within MMP_RS00960 at 179.889 kb on + strand, within MMP_RS00960 at 179.959 kb on - strand, within MMP_RS00960 at 180.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 177,737 + MMP_RS00950 0.32 +0.7 178,056 - MMP_RS00950 0.61 -0.8 178,117 - MMP_RS00950 0.66 +1.4 178,117 - MMP_RS00950 0.66 -1.0 178,117 - MMP_RS00950 0.66 +1.1 178,181 + MMP_RS00950 0.72 -0.5 178,242 + MMP_RS00950 0.77 +0.7 178,270 - MMP_RS00950 0.80 +1.2 178,417 - -0.5 178,449 + +0.3 178,451 + +0.8 178,472 + -1.0 178,604 - +0.4 178,670 + MMP_RS00955 0.17 +1.1 178,758 - MMP_RS00955 0.28 +0.6 179,123 - MMP_RS00955 0.70 -0.2 179,124 + MMP_RS00955 0.70 +1.1 179,126 - MMP_RS00955 0.71 +2.1 179,126 - MMP_RS00955 0.71 +0.4 179,143 - MMP_RS00955 0.72 +3.4 179,143 - MMP_RS00955 0.72 -2.5 179,144 + MMP_RS00955 0.73 +2.5 179,144 + MMP_RS00955 0.73 +0.7 179,144 + MMP_RS00955 0.73 +0.4 179,144 + MMP_RS00955 0.73 +0.7 179,146 + MMP_RS00955 0.73 +0.2 179,229 - MMP_RS00955 0.83 +1.2 179,231 - MMP_RS00955 0.83 -0.7 179,231 - MMP_RS00955 0.83 +0.4 179,232 + MMP_RS00955 0.83 -0.3 179,232 + MMP_RS00955 0.83 +0.3 179,285 + MMP_RS00955 0.89 +1.3 179,386 - +1.3 179,438 + -1.2 179,573 - MMP_RS00960 0.26 +1.4 179,740 + MMP_RS00960 0.48 +0.0 179,889 + MMP_RS00960 0.68 +0.8 179,959 - MMP_RS00960 0.77 +1.1 180,064 - -0.6
Or see this region's nucleotide sequence