Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00935 and MMP_RS00940 are separated by 0 nucleotides MMP_RS00940 and MMP_RS00945 are separated by 1 nucleotides MMP_RS00945 and MMP_RS00950 are separated by 112 nucleotides
MMP_RS00935: MMP_RS00935 - MATE family efflux transporter, at 174,448 to 175,830
_RS00935
MMP_RS00940: MMP_RS00940 - daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein, at 175,831 to 176,799
_RS00940
MMP_RS00945: MMP_RS00945 - PadR family transcriptional regulator, at 176,801 to 177,259
_RS00945
MMP_RS00950: MMP_RS00950 - site-2 protease family protein, at 177,372 to 178,499
_RS00950
Position (kb) 176
177
178 Strain fitness (log2 ratio) -1
0
1
2
3 at 176.026 kb on + strand, within MMP_RS00940 at 176.028 kb on + strand, within MMP_RS00940 at 176.052 kb on - strand, within MMP_RS00940 at 176.220 kb on + strand, within MMP_RS00940 at 176.292 kb on - strand, within MMP_RS00940 at 176.412 kb on - strand, within MMP_RS00940 at 176.429 kb on + strand, within MMP_RS00940 at 176.435 kb on + strand, within MMP_RS00940 at 176.460 kb on - strand, within MMP_RS00940 at 176.652 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.657 kb on + strand, within MMP_RS00940 at 176.743 kb on - strand at 176.749 kb on - strand at 176.750 kb on + strand at 176.757 kb on - strand at 176.834 kb on + strand at 177.212 kb on - strand, within MMP_RS00945 at 177.239 kb on - strand at 177.247 kb on - strand at 177.317 kb on - strand at 177.353 kb on - strand at 177.354 kb on + strand at 177.737 kb on + strand, within MMP_RS00950 at 178.056 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.181 kb on + strand, within MMP_RS00950 at 178.242 kb on + strand, within MMP_RS00950
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 176,026 + MMP_RS00940 0.20 +3.1 176,028 + MMP_RS00940 0.20 +1.2 176,052 - MMP_RS00940 0.23 +1.5 176,220 + MMP_RS00940 0.40 -0.9 176,292 - MMP_RS00940 0.48 +2.0 176,412 - MMP_RS00940 0.60 +0.7 176,429 + MMP_RS00940 0.62 +0.7 176,435 + MMP_RS00940 0.62 -0.7 176,460 - MMP_RS00940 0.65 +0.7 176,652 - MMP_RS00940 0.85 +1.0 176,656 - MMP_RS00940 0.85 +0.4 176,656 - MMP_RS00940 0.85 +1.2 176,657 + MMP_RS00940 0.85 -0.7 176,743 - +1.4 176,749 - -0.1 176,750 + -0.4 176,757 - +2.4 176,834 + -1.4 177,212 - MMP_RS00945 0.90 -1.3 177,239 - +0.8 177,247 - +0.0 177,317 - -0.4 177,353 - +0.0 177,354 + +0.9 177,737 + MMP_RS00950 0.32 +0.7 178,056 - MMP_RS00950 0.61 -0.8 178,117 - MMP_RS00950 0.66 +1.4 178,117 - MMP_RS00950 0.66 -1.0 178,117 - MMP_RS00950 0.66 +1.1 178,181 + MMP_RS00950 0.72 -0.5 178,242 + MMP_RS00950 0.77 +0.7
Or see this region's nucleotide sequence