Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00725 and MMP_RS00730 are separated by 28 nucleotides MMP_RS00730 and MMP_RS00735 are separated by 59 nucleotides
MMP_RS00725: MMP_RS00725 - 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC, at 130,979 to 132,511
_RS00725
MMP_RS00730: MMP_RS00730 - 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB, at 132,540 to 133,565
_RS00730
MMP_RS00735: MMP_RS00735 - 5 10-methenyltetrahydromethanopterin hydrogenase, at 133,625 to 134,689
_RS00735
Position (kb) 132
133
134 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 131.612 kb on + strand, within MMP_RS00725 at 131.657 kb on + strand, within MMP_RS00725 at 131.738 kb on - strand, within MMP_RS00725 at 131.786 kb on - strand, within MMP_RS00725 at 132.136 kb on - strand, within MMP_RS00725 at 132.392 kb on - strand at 132.439 kb on - strand at 132.582 kb on - strand at 132.583 kb on + strand at 132.583 kb on + strand at 132.583 kb on + strand at 132.583 kb on + strand at 132.899 kb on - strand, within MMP_RS00730 at 132.942 kb on - strand, within MMP_RS00730 at 133.070 kb on - strand, within MMP_RS00730 at 133.104 kb on - strand, within MMP_RS00730 at 133.174 kb on + strand, within MMP_RS00730 at 133.288 kb on + strand, within MMP_RS00730 at 133.362 kb on - strand, within MMP_RS00730 at 133.441 kb on - strand, within MMP_RS00730 at 133.490 kb on - strand at 133.586 kb on - strand at 133.609 kb on - strand at 133.622 kb on - strand at 133.713 kb on + strand at 134.255 kb on - strand, within MMP_RS00735 at 134.255 kb on - strand, within MMP_RS00735 at 134.424 kb on + strand, within MMP_RS00735
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 131,612 + MMP_RS00725 0.41 -3.4 131,657 + MMP_RS00725 0.44 -3.7 131,738 - MMP_RS00725 0.50 -0.5 131,786 - MMP_RS00725 0.53 -2.2 132,136 - MMP_RS00725 0.75 -1.8 132,392 - -1.6 132,439 - -1.6 132,582 - -2.9 132,583 + -3.3 132,583 + -3.8 132,583 + -1.1 132,583 + -2.0 132,899 - MMP_RS00730 0.35 -0.4 132,942 - MMP_RS00730 0.39 -5.4 133,070 - MMP_RS00730 0.52 -4.2 133,104 - MMP_RS00730 0.55 -5.0 133,174 + MMP_RS00730 0.62 -3.2 133,288 + MMP_RS00730 0.73 -2.8 133,362 - MMP_RS00730 0.80 -4.2 133,441 - MMP_RS00730 0.88 -1.6 133,490 - -2.0 133,586 - -0.5 133,609 - -0.7 133,622 - -4.4 133,713 + -5.4 134,255 - MMP_RS00735 0.59 -1.9 134,255 - MMP_RS00735 0.59 -1.5 134,424 + MMP_RS00735 0.75 -2.3
Or see this region's nucleotide sequence