Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00275 and MMP_RS00280 are separated by 50 nucleotides MMP_RS00280 and MMP_RS00285 are separated by 4 nucleotides
MMP_RS00275: MMP_RS00275 - polyprenyl synthetase family protein, at 62,928 to 63,881
_RS00275
MMP_RS00280: MMP_RS00280 - DUF2118 domain-containing protein, at 63,932 to 64,384
_RS00280
MMP_RS00285: MMP_RS00285 - TIGR04013 family B12-binding domain/radical SAM domain-containing protein, at 64,389 to 65,498
_RS00285
Position (kb) 63
64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 62.996 kb on - strand at 63.055 kb on + strand at 63.293 kb on - strand at 63.759 kb on - strand at 63.804 kb on - strand at 63.889 kb on - strand at 63.897 kb on - strand at 63.898 kb on + strand at 63.919 kb on - strand at 64.061 kb on - strand, within MMP_RS00280 at 64.071 kb on - strand, within MMP_RS00280 at 64.091 kb on - strand, within MMP_RS00280 at 64.128 kb on - strand, within MMP_RS00280 at 64.147 kb on - strand, within MMP_RS00280 at 64.154 kb on + strand, within MMP_RS00280 at 64.154 kb on + strand, within MMP_RS00280 at 64.162 kb on - strand, within MMP_RS00280 at 64.181 kb on + strand, within MMP_RS00280 at 64.203 kb on + strand, within MMP_RS00280 at 64.287 kb on - strand, within MMP_RS00280 at 64.292 kb on - strand, within MMP_RS00280 at 64.293 kb on + strand, within MMP_RS00280 at 64.293 kb on + strand, within MMP_RS00280 at 64.297 kb on - strand, within MMP_RS00280 at 64.309 kb on + strand, within MMP_RS00280 at 64.323 kb on - strand, within MMP_RS00280 at 64.328 kb on + strand, within MMP_RS00280 at 64.358 kb on - strand at 64.358 kb on - strand at 64.359 kb on + strand at 64.362 kb on - strand at 64.464 kb on + strand at 64.534 kb on - strand, within MMP_RS00285 at 64.535 kb on + strand, within MMP_RS00285 at 64.570 kb on - strand, within MMP_RS00285 at 64.632 kb on + strand, within MMP_RS00285 at 64.722 kb on - strand, within MMP_RS00285 at 64.766 kb on - strand, within MMP_RS00285 at 64.766 kb on - strand, within MMP_RS00285 at 64.777 kb on - strand, within MMP_RS00285 at 64.788 kb on - strand, within MMP_RS00285 at 64.824 kb on - strand, within MMP_RS00285 at 65.009 kb on - strand, within MMP_RS00285 at 65.009 kb on - strand, within MMP_RS00285 at 65.293 kb on + strand, within MMP_RS00285 at 65.371 kb on + strand, within MMP_RS00285 at 65.373 kb on - strand, within MMP_RS00285
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 62,996 - -1.7 63,055 + -1.4 63,293 - +0.6 63,759 - -0.0 63,804 - -2.4 63,889 - -1.0 63,897 - +0.2 63,898 + +2.7 63,919 - +1.3 64,061 - MMP_RS00280 0.28 +0.9 64,071 - MMP_RS00280 0.31 +0.1 64,091 - MMP_RS00280 0.35 +1.5 64,128 - MMP_RS00280 0.43 +0.9 64,147 - MMP_RS00280 0.47 +0.3 64,154 + MMP_RS00280 0.49 +0.5 64,154 + MMP_RS00280 0.49 +0.7 64,162 - MMP_RS00280 0.51 +0.4 64,181 + MMP_RS00280 0.55 +0.1 64,203 + MMP_RS00280 0.60 +0.2 64,287 - MMP_RS00280 0.78 +1.1 64,292 - MMP_RS00280 0.79 +1.0 64,293 + MMP_RS00280 0.80 +0.9 64,293 + MMP_RS00280 0.80 +0.6 64,297 - MMP_RS00280 0.81 +1.8 64,309 + MMP_RS00280 0.83 +0.9 64,323 - MMP_RS00280 0.86 +1.4 64,328 + MMP_RS00280 0.87 +0.8 64,358 - -1.2 64,358 - +1.3 64,359 + -0.1 64,362 - -0.1 64,464 + -0.7 64,534 - MMP_RS00285 0.13 +0.1 64,535 + MMP_RS00285 0.13 -1.5 64,570 - MMP_RS00285 0.16 -1.6 64,632 + MMP_RS00285 0.22 -4.2 64,722 - MMP_RS00285 0.30 +1.1 64,766 - MMP_RS00285 0.34 -1.0 64,766 - MMP_RS00285 0.34 +0.2 64,777 - MMP_RS00285 0.35 -3.2 64,788 - MMP_RS00285 0.36 -2.3 64,824 - MMP_RS00285 0.39 +1.0 65,009 - MMP_RS00285 0.56 -0.8 65,009 - MMP_RS00285 0.56 -0.1 65,293 + MMP_RS00285 0.81 +1.7 65,371 + MMP_RS00285 0.88 -0.1 65,373 - MMP_RS00285 0.89 -0.8
Or see this region's nucleotide sequence