Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00245 and MMP_RS00250 are separated by 11 nucleotides MMP_RS00250 and MMP_RS00255 are separated by 9 nucleotides
MMP_RS00245: MMP_RS00245 - type II secretion system F family protein, at 55,876 to 56,934
_RS00245
MMP_RS00250: MMP_RS00250 - Flp pilus assembly complex ATPase component TadA, at 56,946 to 58,595
_RS00250
MMP_RS00255: MMP_RS00255 - transcription initiation factor IIB, at 58,605 to 59,624
_RS00255
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 56.151 kb on - strand, within MMP_RS00245 at 56.152 kb on + strand, within MMP_RS00245 at 56.193 kb on - strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.197 kb on - strand, within MMP_RS00245 at 56.198 kb on + strand, within MMP_RS00245 at 56.202 kb on - strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.266 kb on - strand, within MMP_RS00245 at 56.267 kb on + strand, within MMP_RS00245 at 56.268 kb on - strand, within MMP_RS00245 at 56.272 kb on + strand, within MMP_RS00245 at 56.356 kb on - strand, within MMP_RS00245 at 56.367 kb on - strand, within MMP_RS00245 at 56.374 kb on - strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.377 kb on - strand, within MMP_RS00245 at 56.443 kb on - strand, within MMP_RS00245 at 56.444 kb on + strand, within MMP_RS00245 at 56.461 kb on + strand, within MMP_RS00245 at 56.464 kb on + strand, within MMP_RS00245 at 56.501 kb on + strand, within MMP_RS00245 at 56.576 kb on - strand, within MMP_RS00245 at 56.577 kb on + strand, within MMP_RS00245 at 56.590 kb on - strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.595 kb on - strand, within MMP_RS00245 at 56.620 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.651 kb on - strand, within MMP_RS00245 at 56.707 kb on - strand, within MMP_RS00245 at 56.708 kb on + strand, within MMP_RS00245 at 56.716 kb on - strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.728 kb on - strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.750 kb on - strand, within MMP_RS00245 at 56.751 kb on + strand, within MMP_RS00245 at 56.759 kb on - strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.768 kb on + strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.782 kb on + strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.788 kb on + strand, within MMP_RS00245 at 56.822 kb on - strand, within MMP_RS00245 at 56.842 kb on + strand at 56.842 kb on + strand at 56.846 kb on + strand at 56.868 kb on - strand at 56.869 kb on + strand at 56.878 kb on - strand at 56.878 kb on - strand at 56.879 kb on + strand at 56.883 kb on - strand at 56.884 kb on + strand at 56.904 kb on - strand at 56.905 kb on + strand at 56.936 kb on - strand at 56.936 kb on - strand at 56.947 kb on - strand at 56.948 kb on + strand at 56.996 kb on - strand at 56.996 kb on - strand at 56.997 kb on + strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.001 kb on + strand at 57.001 kb on + strand at 57.018 kb on + strand at 57.018 kb on + strand at 57.027 kb on + strand at 57.029 kb on - strand at 57.044 kb on - strand at 57.046 kb on - strand at 57.046 kb on - strand at 57.046 kb on - strand at 57.047 kb on + strand at 57.047 kb on + strand at 57.047 kb on + strand at 57.051 kb on - strand at 57.065 kb on - strand at 57.065 kb on - strand at 57.066 kb on + strand at 57.085 kb on + strand at 57.135 kb on + strand, within MMP_RS00250 at 57.135 kb on + strand, within MMP_RS00250 at 57.197 kb on - strand, within MMP_RS00250 at 57.270 kb on + strand, within MMP_RS00250 at 57.454 kb on + strand, within MMP_RS00250 at 57.603 kb on + strand, within MMP_RS00250 at 57.606 kb on - strand, within MMP_RS00250 at 57.607 kb on + strand, within MMP_RS00250 at 57.621 kb on + strand, within MMP_RS00250 at 57.622 kb on - strand, within MMP_RS00250 at 57.623 kb on + strand, within MMP_RS00250 at 57.623 kb on + strand, within MMP_RS00250 at 57.657 kb on + strand, within MMP_RS00250 at 57.715 kb on - strand, within MMP_RS00250 at 57.813 kb on + strand, within MMP_RS00250 at 57.939 kb on - strand, within MMP_RS00250 at 57.941 kb on - strand, within MMP_RS00250 at 58.107 kb on - strand, within MMP_RS00250 at 58.111 kb on + strand, within MMP_RS00250 at 58.115 kb on + strand, within MMP_RS00250 at 58.121 kb on + strand, within MMP_RS00250 at 58.128 kb on - strand, within MMP_RS00250 at 58.128 kb on - strand, within MMP_RS00250 at 58.143 kb on - strand, within MMP_RS00250 at 58.143 kb on - strand, within MMP_RS00250 at 58.144 kb on + strand, within MMP_RS00250 at 58.220 kb on - strand, within MMP_RS00250 at 58.221 kb on + strand, within MMP_RS00250 at 58.243 kb on + strand, within MMP_RS00250 at 58.243 kb on + strand, within MMP_RS00250 at 58.253 kb on - strand, within MMP_RS00250 at 58.259 kb on - strand, within MMP_RS00250 at 58.313 kb on + strand, within MMP_RS00250 at 58.313 kb on + strand, within MMP_RS00250 at 58.313 kb on + strand, within MMP_RS00250 at 58.315 kb on + strand, within MMP_RS00250 at 58.344 kb on - strand, within MMP_RS00250 at 58.344 kb on - strand, within MMP_RS00250 at 58.378 kb on - strand, within MMP_RS00250 at 58.379 kb on + strand, within MMP_RS00250 at 58.379 kb on + strand, within MMP_RS00250 at 58.389 kb on - strand, within MMP_RS00250 at 58.401 kb on + strand, within MMP_RS00250 at 58.500 kb on - strand at 58.500 kb on - strand at 58.501 kb on + strand at 58.501 kb on + strand at 58.531 kb on + strand at 58.531 kb on + strand at 58.595 kb on - strand at 58.607 kb on + strand at 58.608 kb on - strand at 58.614 kb on - strand at 58.627 kb on + strand at 58.653 kb on + strand at 58.664 kb on - strand at 59.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 56,151 - MMP_RS00245 0.26 -3.6 56,152 + MMP_RS00245 0.26 -2.3 56,193 - MMP_RS00245 0.30 +3.1 56,194 + MMP_RS00245 0.30 -1.9 56,194 + MMP_RS00245 0.30 -0.7 56,197 - MMP_RS00245 0.30 -1.1 56,198 + MMP_RS00245 0.30 -3.7 56,202 - MMP_RS00245 0.31 -1.8 56,242 + MMP_RS00245 0.35 -3.2 56,242 + MMP_RS00245 0.35 -2.2 56,266 - MMP_RS00245 0.37 -1.5 56,267 + MMP_RS00245 0.37 -1.0 56,268 - MMP_RS00245 0.37 -1.6 56,272 + MMP_RS00245 0.37 -1.9 56,356 - MMP_RS00245 0.45 -1.4 56,367 - MMP_RS00245 0.46 -2.0 56,374 - MMP_RS00245 0.47 -2.2 56,375 + MMP_RS00245 0.47 -2.8 56,375 + MMP_RS00245 0.47 -1.6 56,377 - MMP_RS00245 0.47 -2.4 56,443 - MMP_RS00245 0.54 -2.4 56,444 + MMP_RS00245 0.54 -1.0 56,461 + MMP_RS00245 0.55 -1.0 56,464 + MMP_RS00245 0.56 -1.9 56,501 + MMP_RS00245 0.59 -5.0 56,576 - MMP_RS00245 0.66 -4.0 56,577 + MMP_RS00245 0.66 -2.3 56,590 - MMP_RS00245 0.67 -4.9 56,591 + MMP_RS00245 0.68 -1.5 56,591 + MMP_RS00245 0.68 -3.1 56,595 - MMP_RS00245 0.68 -1.3 56,620 + MMP_RS00245 0.70 -4.3 56,644 + MMP_RS00245 0.73 -2.1 56,644 + MMP_RS00245 0.73 -2.8 56,651 - MMP_RS00245 0.73 -2.7 56,707 - MMP_RS00245 0.78 -2.5 56,708 + MMP_RS00245 0.79 -0.9 56,716 - MMP_RS00245 0.79 -2.3 56,717 + MMP_RS00245 0.79 -3.0 56,717 + MMP_RS00245 0.79 -2.3 56,725 + MMP_RS00245 0.80 -0.5 56,725 + MMP_RS00245 0.80 -2.6 56,728 - MMP_RS00245 0.80 -2.6 56,749 + MMP_RS00245 0.82 -1.8 56,749 + MMP_RS00245 0.82 -1.7 56,750 - MMP_RS00245 0.83 -1.1 56,751 + MMP_RS00245 0.83 -2.8 56,759 - MMP_RS00245 0.83 -1.8 56,760 + MMP_RS00245 0.83 -1.8 56,760 + MMP_RS00245 0.83 -1.4 56,768 + MMP_RS00245 0.84 -1.3 56,781 - MMP_RS00245 0.85 -3.4 56,781 - MMP_RS00245 0.85 -1.2 56,781 - MMP_RS00245 0.85 -5.0 56,782 + MMP_RS00245 0.86 -2.0 56,785 - MMP_RS00245 0.86 -2.9 56,785 - MMP_RS00245 0.86 -2.2 56,785 - MMP_RS00245 0.86 -3.4 56,785 - MMP_RS00245 0.86 -0.9 56,786 + MMP_RS00245 0.86 -2.8 56,786 + MMP_RS00245 0.86 -3.8 56,786 + MMP_RS00245 0.86 -2.0 56,786 + MMP_RS00245 0.86 -1.0 56,788 + MMP_RS00245 0.86 -1.0 56,822 - MMP_RS00245 0.89 -0.4 56,842 + -1.2 56,842 + -1.6 56,846 + -6.4 56,868 - -2.6 56,869 + -3.1 56,878 - -2.5 56,878 - -4.1 56,879 + -3.5 56,883 - -0.7 56,884 + -6.2 56,904 - -0.9 56,905 + -1.8 56,936 - -1.4 56,936 - -2.4 56,947 - -2.2 56,948 + -2.5 56,996 - -2.0 56,996 - -1.8 56,997 + -1.3 57,000 - -1.1 57,000 - -1.0 57,000 - -2.2 57,000 - -1.6 57,001 + -2.6 57,001 + -2.0 57,018 + -2.4 57,018 + -1.2 57,027 + -2.0 57,029 - -6.3 57,044 - +2.1 57,046 - -0.7 57,046 - -1.2 57,046 - -4.3 57,047 + -2.0 57,047 + -2.1 57,047 + -1.4 57,051 - -2.2 57,065 - -1.3 57,065 - -1.7 57,066 + -1.4 57,085 + -0.3 57,135 + MMP_RS00250 0.11 -2.1 57,135 + MMP_RS00250 0.11 -1.9 57,197 - MMP_RS00250 0.15 -1.1 57,270 + MMP_RS00250 0.20 -1.9 57,454 + MMP_RS00250 0.31 -1.8 57,603 + MMP_RS00250 0.40 -3.2 57,606 - MMP_RS00250 0.40 -2.5 57,607 + MMP_RS00250 0.40 -3.5 57,621 + MMP_RS00250 0.41 -4.7 57,622 - MMP_RS00250 0.41 -1.7 57,623 + MMP_RS00250 0.41 -2.6 57,623 + MMP_RS00250 0.41 -2.0 57,657 + MMP_RS00250 0.43 -1.7 57,715 - MMP_RS00250 0.47 -1.6 57,813 + MMP_RS00250 0.53 -2.3 57,939 - MMP_RS00250 0.60 -1.2 57,941 - MMP_RS00250 0.60 -3.7 58,107 - MMP_RS00250 0.70 -2.7 58,111 + MMP_RS00250 0.71 +0.6 58,115 + MMP_RS00250 0.71 -1.6 58,121 + MMP_RS00250 0.71 -5.3 58,128 - MMP_RS00250 0.72 -1.3 58,128 - MMP_RS00250 0.72 -5.0 58,143 - MMP_RS00250 0.73 -1.4 58,143 - MMP_RS00250 0.73 -3.5 58,144 + MMP_RS00250 0.73 -3.1 58,220 - MMP_RS00250 0.77 -1.5 58,221 + MMP_RS00250 0.77 -1.5 58,243 + MMP_RS00250 0.79 -0.9 58,243 + MMP_RS00250 0.79 -1.6 58,253 - MMP_RS00250 0.79 -1.7 58,259 - MMP_RS00250 0.80 -3.2 58,313 + MMP_RS00250 0.83 -3.2 58,313 + MMP_RS00250 0.83 -5.0 58,313 + MMP_RS00250 0.83 +1.4 58,315 + MMP_RS00250 0.83 -1.8 58,344 - MMP_RS00250 0.85 -2.1 58,344 - MMP_RS00250 0.85 -0.7 58,378 - MMP_RS00250 0.87 -0.6 58,379 + MMP_RS00250 0.87 -1.7 58,379 + MMP_RS00250 0.87 -3.0 58,389 - MMP_RS00250 0.87 -0.5 58,401 + MMP_RS00250 0.88 -2.1 58,500 - -2.7 58,500 - -3.3 58,501 + -4.4 58,501 + -1.4 58,531 + -5.8 58,531 + -1.4 58,595 - -2.7 58,607 + -1.2 58,608 - -2.5 58,614 - -2.1 58,627 + -1.4 58,653 + -3.7 58,664 - -2.0 59,349 + -0.6
Or see this region's nucleotide sequence