Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00180 and MMP_RS00185 are separated by 229 nucleotides MMP_RS00185 and MMP_RS00190 are separated by 72 nucleotides
MMP_RS00180: MMP_RS00180 - 16S ribosomal RNA, at 40,485 to 41,951
_RS00180
MMP_RS00185: MMP_RS00185 - potassium channel protein, at 42,181 to 43,188
_RS00185
MMP_RS00190: MMP_RS00190 - cobyrinic acid a c-diamide synthase, at 43,261 to 44,712
_RS00190
Position (kb) 42
43
44 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 42.154 kb on + strand at 42.154 kb on + strand at 42.156 kb on + strand at 42.183 kb on + strand at 42.206 kb on + strand at 42.321 kb on - strand, within MMP_RS00185 at 42.324 kb on - strand, within MMP_RS00185 at 42.324 kb on - strand, within MMP_RS00185 at 42.325 kb on + strand, within MMP_RS00185 at 42.414 kb on + strand, within MMP_RS00185 at 42.419 kb on - strand, within MMP_RS00185 at 42.429 kb on - strand, within MMP_RS00185 at 42.429 kb on - strand, within MMP_RS00185 at 42.430 kb on + strand, within MMP_RS00185 at 42.505 kb on + strand, within MMP_RS00185 at 42.622 kb on + strand, within MMP_RS00185 at 42.625 kb on - strand, within MMP_RS00185 at 42.625 kb on - strand, within MMP_RS00185 at 42.626 kb on + strand, within MMP_RS00185 at 42.626 kb on + strand, within MMP_RS00185 at 42.626 kb on + strand, within MMP_RS00185 at 42.626 kb on + strand, within MMP_RS00185 at 42.631 kb on + strand, within MMP_RS00185 at 42.677 kb on + strand, within MMP_RS00185 at 42.688 kb on - strand, within MMP_RS00185 at 42.689 kb on + strand, within MMP_RS00185 at 42.691 kb on - strand, within MMP_RS00185 at 42.723 kb on - strand, within MMP_RS00185 at 42.723 kb on - strand, within MMP_RS00185 at 42.724 kb on + strand, within MMP_RS00185 at 42.726 kb on + strand, within MMP_RS00185 at 42.775 kb on + strand, within MMP_RS00185 at 42.823 kb on - strand, within MMP_RS00185 at 42.924 kb on + strand, within MMP_RS00185 at 42.961 kb on + strand, within MMP_RS00185 at 42.972 kb on - strand, within MMP_RS00185 at 42.990 kb on - strand, within MMP_RS00185 at 43.087 kb on - strand, within MMP_RS00185 at 43.088 kb on + strand at 43.108 kb on + strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.110 kb on + strand at 43.110 kb on + strand at 43.137 kb on - strand at 43.138 kb on + strand at 43.138 kb on + strand at 43.138 kb on + strand at 43.147 kb on - strand at 43.148 kb on + strand at 43.148 kb on + strand at 43.150 kb on - strand at 43.168 kb on + strand at 43.203 kb on - strand at 43.207 kb on - strand at 43.207 kb on - strand at 43.208 kb on + strand at 43.210 kb on + strand at 43.217 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.221 kb on - strand at 43.221 kb on - strand at 43.221 kb on - strand at 43.221 kb on - strand at 43.222 kb on + strand at 43.222 kb on + strand at 43.222 kb on + strand at 43.227 kb on + strand at 43.234 kb on + strand at 43.235 kb on - strand at 43.236 kb on + strand at 43.237 kb on - strand at 43.237 kb on - strand at 43.237 kb on - strand at 43.362 kb on + strand at 43.459 kb on - strand at 43.460 kb on + strand at 43.460 kb on + strand at 43.460 kb on + strand at 43.473 kb on + strand at 43.510 kb on + strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.560 kb on + strand at 43.581 kb on + strand at 43.969 kb on + strand at 44.097 kb on - strand at 44.112 kb on + strand at 44.130 kb on - strand at 44.131 kb on + strand at 44.156 kb on - strand at 44.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 42,154 + +0.6 42,154 + -1.1 42,156 + +0.3 42,183 + +0.1 42,206 + -3.5 42,321 - MMP_RS00185 0.14 -5.7 42,324 - MMP_RS00185 0.14 -0.8 42,324 - MMP_RS00185 0.14 -0.4 42,325 + MMP_RS00185 0.14 -1.5 42,414 + MMP_RS00185 0.23 -1.1 42,419 - MMP_RS00185 0.24 -3.2 42,429 - MMP_RS00185 0.25 -1.2 42,429 - MMP_RS00185 0.25 -2.9 42,430 + MMP_RS00185 0.25 -0.5 42,505 + MMP_RS00185 0.32 -5.7 42,622 + MMP_RS00185 0.44 -3.3 42,625 - MMP_RS00185 0.44 -0.9 42,625 - MMP_RS00185 0.44 -1.5 42,626 + MMP_RS00185 0.44 -1.4 42,626 + MMP_RS00185 0.44 -1.8 42,626 + MMP_RS00185 0.44 -3.6 42,626 + MMP_RS00185 0.44 -1.4 42,631 + MMP_RS00185 0.45 -4.7 42,677 + MMP_RS00185 0.49 -2.1 42,688 - MMP_RS00185 0.50 -2.3 42,689 + MMP_RS00185 0.50 +0.1 42,691 - MMP_RS00185 0.51 -3.0 42,723 - MMP_RS00185 0.54 -1.5 42,723 - MMP_RS00185 0.54 -4.5 42,724 + MMP_RS00185 0.54 -1.5 42,726 + MMP_RS00185 0.54 -2.0 42,775 + MMP_RS00185 0.59 -2.4 42,823 - MMP_RS00185 0.64 -1.5 42,924 + MMP_RS00185 0.74 -2.4 42,961 + MMP_RS00185 0.77 -4.3 42,972 - MMP_RS00185 0.78 -0.9 42,990 - MMP_RS00185 0.80 -0.9 43,087 - MMP_RS00185 0.90 -1.3 43,088 + -0.7 43,108 + -0.9 43,109 - -1.1 43,109 - -3.5 43,109 - -1.4 43,109 - -0.2 43,109 - -1.3 43,109 - -1.9 43,110 + -1.6 43,110 + -4.1 43,137 - +0.6 43,138 + -2.9 43,138 + -2.9 43,138 + -2.2 43,147 - -0.8 43,148 + -1.9 43,148 + -3.0 43,150 - +0.6 43,168 + -3.1 43,203 - -1.0 43,207 - -1.8 43,207 - -0.5 43,208 + -0.2 43,210 + -1.8 43,217 - -1.4 43,219 - -0.4 43,219 - +0.3 43,219 - -4.0 43,219 - -3.3 43,219 - -2.6 43,219 - -0.6 43,219 - -0.8 43,219 - -0.3 43,219 - +0.9 43,220 + +0.1 43,220 + -4.4 43,220 + -1.9 43,220 + -0.8 43,220 + -1.1 43,220 + -2.6 43,221 - -0.6 43,221 - -0.8 43,221 - -0.2 43,221 - -2.0 43,222 + +1.4 43,222 + -5.4 43,222 + -2.2 43,227 + +0.1 43,234 + -2.4 43,235 - -2.1 43,236 + -3.4 43,237 - -1.5 43,237 - -1.6 43,237 - +0.3 43,362 + -0.8 43,459 - -3.0 43,460 + -2.2 43,460 + -2.0 43,460 + -3.6 43,473 + -3.8 43,510 + -0.5 43,538 - -3.5 43,538 - -2.7 43,538 - -3.2 43,560 + -3.1 43,581 + -1.0 43,969 + -1.0 44,097 - -0.0 44,112 + -2.4 44,130 - -2.7 44,131 + +1.3 44,156 - -1.2 44,157 + -1.7
Or see this region's nucleotide sequence