Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04795 and MMP_RS04800 are separated by 10 nucleotides MMP_RS04800 and MMP_RS04805 are separated by 44 nucleotides MMP_RS04805 and MMP_RS04810 are separated by 4 nucleotides
MMP_RS04795: MMP_RS04795 - tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY, at 912,553 to 913,155
_RS04795
MMP_RS04800: MMP_RS04800 - chemotaxis protein CheW, at 913,166 to 913,609
_RS04800
MMP_RS04805: MMP_RS04805 - chemotaxis response regulator protein-glutamate methylesterase, at 913,654 to 914,751
_RS04805
MMP_RS04810: MMP_RS04810 - chemotaxis protein CheA, at 914,756 to 917,518
_RS04810
Position (kb) 913
914
915 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 912.688 kb on + strand, within MMP_RS04795 at 912.721 kb on - strand, within MMP_RS04795 at 912.722 kb on + strand, within MMP_RS04795 at 912.722 kb on + strand, within MMP_RS04795 at 912.722 kb on + strand, within MMP_RS04795 at 912.722 kb on + strand, within MMP_RS04795 at 912.859 kb on + strand, within MMP_RS04795 at 912.871 kb on - strand, within MMP_RS04795 at 912.901 kb on + strand, within MMP_RS04795 at 912.937 kb on - strand, within MMP_RS04795 at 912.978 kb on - strand, within MMP_RS04795 at 913.119 kb on + strand at 913.132 kb on + strand at 913.135 kb on + strand at 913.135 kb on + strand at 913.136 kb on - strand at 913.136 kb on - strand at 913.137 kb on + strand at 913.139 kb on - strand at 913.221 kb on - strand, within MMP_RS04800 at 913.248 kb on - strand, within MMP_RS04800 at 913.289 kb on - strand, within MMP_RS04800 at 913.290 kb on + strand, within MMP_RS04800 at 913.290 kb on + strand, within MMP_RS04800 at 913.290 kb on + strand, within MMP_RS04800 at 913.304 kb on + strand, within MMP_RS04800 at 913.342 kb on + strand, within MMP_RS04800 at 913.342 kb on - strand, within MMP_RS04800 at 913.401 kb on - strand, within MMP_RS04800 at 913.401 kb on - strand, within MMP_RS04800 at 913.438 kb on + strand, within MMP_RS04800 at 913.462 kb on + strand, within MMP_RS04800 at 913.555 kb on - strand, within MMP_RS04800 at 913.608 kb on + strand at 913.630 kb on - strand at 913.630 kb on - strand at 913.631 kb on + strand at 913.673 kb on - strand at 913.680 kb on + strand at 913.808 kb on - strand, within MMP_RS04805 at 913.809 kb on + strand, within MMP_RS04805 at 913.813 kb on + strand, within MMP_RS04805 at 913.854 kb on - strand, within MMP_RS04805 at 913.889 kb on - strand, within MMP_RS04805 at 914.001 kb on - strand, within MMP_RS04805 at 914.057 kb on - strand, within MMP_RS04805 at 914.183 kb on - strand, within MMP_RS04805 at 914.187 kb on + strand, within MMP_RS04805 at 914.190 kb on + strand, within MMP_RS04805 at 914.190 kb on + strand, within MMP_RS04805 at 914.190 kb on + strand, within MMP_RS04805 at 914.228 kb on - strand, within MMP_RS04805 at 914.383 kb on - strand, within MMP_RS04805 at 914.435 kb on - strand, within MMP_RS04805 at 914.435 kb on - strand, within MMP_RS04805 at 914.436 kb on + strand, within MMP_RS04805 at 914.436 kb on + strand, within MMP_RS04805 at 914.437 kb on - strand, within MMP_RS04805 at 914.437 kb on - strand, within MMP_RS04805 at 914.438 kb on + strand, within MMP_RS04805 at 914.495 kb on - strand, within MMP_RS04805 at 914.495 kb on - strand, within MMP_RS04805 at 914.519 kb on + strand, within MMP_RS04805 at 914.519 kb on + strand, within MMP_RS04805 at 914.544 kb on + strand, within MMP_RS04805 at 914.610 kb on - strand, within MMP_RS04805 at 914.611 kb on + strand, within MMP_RS04805 at 914.611 kb on + strand, within MMP_RS04805 at 914.641 kb on + strand, within MMP_RS04805 at 914.692 kb on + strand at 914.702 kb on - strand at 914.774 kb on - strand at 914.775 kb on + strand at 914.777 kb on + strand at 914.777 kb on + strand at 914.784 kb on - strand at 914.785 kb on + strand at 914.785 kb on + strand at 914.830 kb on - strand at 914.830 kb on - strand at 914.831 kb on + strand at 914.938 kb on - strand at 914.939 kb on + strand at 914.939 kb on + strand at 914.978 kb on - strand at 914.978 kb on - strand at 915.125 kb on + strand, within MMP_RS04810 at 915.144 kb on + strand, within MMP_RS04810 at 915.178 kb on + strand, within MMP_RS04810 at 915.182 kb on - strand, within MMP_RS04810 at 915.184 kb on - strand, within MMP_RS04810 at 915.184 kb on - strand, within MMP_RS04810 at 915.238 kb on - strand, within MMP_RS04810 at 915.238 kb on - strand, within MMP_RS04810 at 915.239 kb on + strand, within MMP_RS04810 at 915.239 kb on + strand, within MMP_RS04810 at 915.239 kb on + strand, within MMP_RS04810 at 915.270 kb on - strand, within MMP_RS04810 at 915.288 kb on - strand, within MMP_RS04810 at 915.289 kb on + strand, within MMP_RS04810 at 915.289 kb on + strand, within MMP_RS04810 at 915.289 kb on + strand, within MMP_RS04810 at 915.292 kb on - strand, within MMP_RS04810 at 915.292 kb on - strand, within MMP_RS04810 at 915.308 kb on + strand, within MMP_RS04810 at 915.310 kb on - strand, within MMP_RS04810 at 915.318 kb on - strand, within MMP_RS04810 at 915.319 kb on + strand, within MMP_RS04810 at 915.424 kb on - strand, within MMP_RS04810 at 915.462 kb on - strand, within MMP_RS04810 at 915.504 kb on - strand, within MMP_RS04810 at 915.576 kb on + strand, within MMP_RS04810 at 915.585 kb on - strand, within MMP_RS04810 at 915.586 kb on + strand, within MMP_RS04810 at 915.661 kb on - strand, within MMP_RS04810 at 915.662 kb on + strand, within MMP_RS04810 at 915.662 kb on + strand, within MMP_RS04810 at 915.662 kb on + strand, within MMP_RS04810 at 915.666 kb on - strand, within MMP_RS04810 at 915.666 kb on - strand, within MMP_RS04810 at 915.666 kb on - strand, within MMP_RS04810 at 915.666 kb on - strand, within MMP_RS04810 at 915.666 kb on - strand, within MMP_RS04810 at 915.696 kb on - strand, within MMP_RS04810 at 915.735 kb on - strand, within MMP_RS04810 at 915.735 kb on - strand, within MMP_RS04810 at 915.736 kb on + strand, within MMP_RS04810
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM remove 912,688 + MMP_RS04795 0.22 +2.1 912,721 - MMP_RS04795 0.28 -0.2 912,722 + MMP_RS04795 0.28 +0.3 912,722 + MMP_RS04795 0.28 +1.7 912,722 + MMP_RS04795 0.28 +3.1 912,722 + MMP_RS04795 0.28 -0.1 912,859 + MMP_RS04795 0.51 +0.5 912,871 - MMP_RS04795 0.53 +1.3 912,901 + MMP_RS04795 0.58 -0.4 912,937 - MMP_RS04795 0.64 +0.2 912,978 - MMP_RS04795 0.70 +0.4 913,119 + -0.2 913,132 + +0.2 913,135 + +0.8 913,135 + -0.7 913,136 - +0.2 913,136 - +0.5 913,137 + +0.1 913,139 - +0.2 913,221 - MMP_RS04800 0.12 -1.2 913,248 - MMP_RS04800 0.18 +0.1 913,289 - MMP_RS04800 0.28 +0.5 913,290 + MMP_RS04800 0.28 +2.0 913,290 + MMP_RS04800 0.28 -0.8 913,290 + MMP_RS04800 0.28 -1.3 913,304 + MMP_RS04800 0.31 +0.4 913,342 + MMP_RS04800 0.40 +0.6 913,342 - MMP_RS04800 0.40 -0.5 913,401 - MMP_RS04800 0.53 +0.1 913,401 - MMP_RS04800 0.53 +0.3 913,438 + MMP_RS04800 0.61 -1.3 913,462 + MMP_RS04800 0.67 +1.8 913,555 - MMP_RS04800 0.88 -4.1 913,608 + +0.5 913,630 - +1.8 913,630 - -1.1 913,631 + +2.7 913,673 - -0.3 913,680 + +0.4 913,808 - MMP_RS04805 0.14 -0.7 913,809 + MMP_RS04805 0.14 +1.4 913,813 + MMP_RS04805 0.14 -0.9 913,854 - MMP_RS04805 0.18 +1.9 913,889 - MMP_RS04805 0.21 +0.6 914,001 - MMP_RS04805 0.32 +1.4 914,057 - MMP_RS04805 0.37 +0.4 914,183 - MMP_RS04805 0.48 -0.5 914,187 + MMP_RS04805 0.49 +0.1 914,190 + MMP_RS04805 0.49 +0.3 914,190 + MMP_RS04805 0.49 -0.1 914,190 + MMP_RS04805 0.49 +1.5 914,228 - MMP_RS04805 0.52 +0.3 914,383 - MMP_RS04805 0.66 -0.7 914,435 - MMP_RS04805 0.71 -1.2 914,435 - MMP_RS04805 0.71 +0.4 914,436 + MMP_RS04805 0.71 +2.2 914,436 + MMP_RS04805 0.71 -0.7 914,437 - MMP_RS04805 0.71 +2.4 914,437 - MMP_RS04805 0.71 -0.3 914,438 + MMP_RS04805 0.71 -0.9 914,495 - MMP_RS04805 0.77 +1.1 914,495 - MMP_RS04805 0.77 +0.1 914,519 + MMP_RS04805 0.79 +1.3 914,519 + MMP_RS04805 0.79 +1.3 914,544 + MMP_RS04805 0.81 -1.5 914,610 - MMP_RS04805 0.87 +0.7 914,611 + MMP_RS04805 0.87 -0.5 914,611 + MMP_RS04805 0.87 +1.2 914,641 + MMP_RS04805 0.90 +2.2 914,692 + +0.6 914,702 - +1.9 914,774 - +2.2 914,775 + +1.3 914,777 + +1.4 914,777 + +0.1 914,784 - -0.5 914,785 + +0.7 914,785 + +0.5 914,830 - +0.3 914,830 - +0.3 914,831 + -4.7 914,938 - -2.2 914,939 + +2.5 914,939 + +0.9 914,978 - +1.8 914,978 - +0.8 915,125 + MMP_RS04810 0.13 -0.7 915,144 + MMP_RS04810 0.14 -1.4 915,178 + MMP_RS04810 0.15 -0.7 915,182 - MMP_RS04810 0.15 +1.0 915,184 - MMP_RS04810 0.15 +0.3 915,184 - MMP_RS04810 0.15 +0.7 915,238 - MMP_RS04810 0.17 +0.3 915,238 - MMP_RS04810 0.17 -0.7 915,239 + MMP_RS04810 0.17 -1.7 915,239 + MMP_RS04810 0.17 +0.2 915,239 + MMP_RS04810 0.17 +1.0 915,270 - MMP_RS04810 0.19 +1.4 915,288 - MMP_RS04810 0.19 +1.3 915,289 + MMP_RS04810 0.19 +1.6 915,289 + MMP_RS04810 0.19 +1.4 915,289 + MMP_RS04810 0.19 -0.1 915,292 - MMP_RS04810 0.19 +2.2 915,292 - MMP_RS04810 0.19 +1.1 915,308 + MMP_RS04810 0.20 +0.8 915,310 - MMP_RS04810 0.20 -0.6 915,318 - MMP_RS04810 0.20 -0.6 915,319 + MMP_RS04810 0.20 +2.4 915,424 - MMP_RS04810 0.24 -0.2 915,462 - MMP_RS04810 0.26 -1.9 915,504 - MMP_RS04810 0.27 -1.4 915,576 + MMP_RS04810 0.30 -0.7 915,585 - MMP_RS04810 0.30 +1.2 915,586 + MMP_RS04810 0.30 +1.1 915,661 - MMP_RS04810 0.33 -0.2 915,662 + MMP_RS04810 0.33 +0.3 915,662 + MMP_RS04810 0.33 +1.4 915,662 + MMP_RS04810 0.33 -0.3 915,666 - MMP_RS04810 0.33 -0.5 915,666 - MMP_RS04810 0.33 -2.0 915,666 - MMP_RS04810 0.33 +0.2 915,666 - MMP_RS04810 0.33 -1.1 915,666 - MMP_RS04810 0.33 -0.7 915,696 - MMP_RS04810 0.34 +0.5 915,735 - MMP_RS04810 0.35 +0.1 915,735 - MMP_RS04810 0.35 -1.4 915,736 + MMP_RS04810 0.35 -2.8
Or see this region's nucleotide sequence