Experiment: McCas_formate_complete potassium hexahydroxoantimonate 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04120 and MMP_RS04125 are separated by 214 nucleotides MMP_RS04125 and MMP_RS04130 are separated by 102 nucleotides MMP_RS04130 and MMP_RS04135 are separated by 15 nucleotides
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
MMP_RS04125: MMP_RS04125 - TetR/AcrR family transcriptional regulator, at 784,022 to 784,600
_RS04125
MMP_RS04130: MMP_RS04130 - alpha/beta hydrolase, at 784,703 to 785,689
_RS04130
MMP_RS04135: MMP_RS04135 - DUF3737 family protein, at 785,705 to 786,652
_RS04135
Position (kb) 784
785
786 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand at 783.850 kb on - strand at 783.850 kb on - strand at 783.855 kb on - strand at 783.859 kb on + strand at 783.859 kb on + strand at 783.861 kb on - strand at 783.866 kb on - strand at 783.866 kb on - strand at 783.904 kb on - strand at 783.921 kb on - strand at 783.969 kb on - strand at 783.969 kb on - strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.972 kb on + strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.055 kb on + strand at 784.142 kb on + strand, within MMP_RS04125 at 784.504 kb on + strand, within MMP_RS04125 at 784.513 kb on + strand, within MMP_RS04125 at 784.534 kb on - strand, within MMP_RS04125 at 784.547 kb on + strand at 784.573 kb on - strand at 784.576 kb on + strand at 784.576 kb on + strand at 784.610 kb on + strand at 784.649 kb on - strand at 784.650 kb on + strand at 784.653 kb on - strand at 784.658 kb on - strand at 784.671 kb on - strand at 784.765 kb on + strand at 784.823 kb on - strand, within MMP_RS04130 at 784.823 kb on - strand, within MMP_RS04130 at 784.823 kb on - strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.844 kb on + strand, within MMP_RS04130 at 784.873 kb on + strand, within MMP_RS04130 at 784.914 kb on - strand, within MMP_RS04130 at 784.914 kb on - strand, within MMP_RS04130 at 784.970 kb on - strand, within MMP_RS04130 at 785.020 kb on + strand, within MMP_RS04130 at 785.020 kb on + strand, within MMP_RS04130 at 785.073 kb on - strand, within MMP_RS04130 at 785.074 kb on + strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.181 kb on + strand, within MMP_RS04130 at 785.185 kb on - strand, within MMP_RS04130 at 785.185 kb on - strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.187 kb on - strand, within MMP_RS04130 at 785.187 kb on - strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.239 kb on - strand, within MMP_RS04130 at 785.250 kb on - strand, within MMP_RS04130 at 785.301 kb on - strand, within MMP_RS04130 at 785.352 kb on - strand, within MMP_RS04130 at 785.353 kb on + strand, within MMP_RS04130 at 785.385 kb on + strand, within MMP_RS04130 at 785.409 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.475 kb on + strand, within MMP_RS04130 at 785.475 kb on + strand, within MMP_RS04130 at 785.512 kb on + strand, within MMP_RS04130 at 785.537 kb on - strand, within MMP_RS04130 at 785.555 kb on - strand, within MMP_RS04130 at 785.585 kb on - strand, within MMP_RS04130 at 785.585 kb on - strand, within MMP_RS04130 at 785.609 kb on + strand at 785.609 kb on + strand at 785.658 kb on - strand at 785.688 kb on + strand at 785.698 kb on + strand at 785.700 kb on - strand at 785.700 kb on - strand at 785.701 kb on + strand at 785.731 kb on + strand at 785.734 kb on - strand at 785.811 kb on - strand, within MMP_RS04135 at 785.812 kb on + strand, within MMP_RS04135 at 785.814 kb on + strand, within MMP_RS04135 at 785.824 kb on + strand, within MMP_RS04135 at 785.934 kb on - strand, within MMP_RS04135 at 785.936 kb on - strand, within MMP_RS04135 at 786.041 kb on - strand, within MMP_RS04135 at 786.044 kb on + strand, within MMP_RS04135 at 786.064 kb on + strand, within MMP_RS04135 at 786.083 kb on + strand, within MMP_RS04135 at 786.086 kb on + strand, within MMP_RS04135 at 786.094 kb on + strand, within MMP_RS04135 at 786.116 kb on + strand, within MMP_RS04135 at 786.128 kb on + strand, within MMP_RS04135 at 786.128 kb on + strand, within MMP_RS04135 at 786.131 kb on + strand, within MMP_RS04135 at 786.355 kb on - strand, within MMP_RS04135 at 786.355 kb on - strand, within MMP_RS04135 at 786.356 kb on + strand, within MMP_RS04135 at 786.383 kb on - strand, within MMP_RS04135 at 786.532 kb on - strand, within MMP_RS04135 at 786.533 kb on + strand, within MMP_RS04135
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete potassium hexahydroxoantimonate 0.5 mM remove 783,717 - MMP_RS04120 0.85 +0.7 783,759 - -0.7 783,795 - -0.1 783,800 - -0.1 783,801 + +0.3 783,819 + +0.1 783,850 - -0.1 783,850 - -0.0 783,855 - +0.4 783,859 + +0.3 783,859 + -0.8 783,861 - +0.5 783,866 - -0.5 783,866 - +0.8 783,904 - +0.2 783,921 - +0.3 783,969 - +0.2 783,969 - -0.9 783,970 + -0.3 783,970 + +0.6 783,970 + -0.7 783,972 + -0.6 784,017 - +1.2 784,017 - -0.6 784,017 - -1.0 784,018 + -0.2 784,018 + -0.0 784,018 + +0.5 784,019 - +1.0 784,019 - +0.6 784,019 - -1.5 784,020 + +0.8 784,020 + -0.8 784,020 + +0.6 784,020 + +0.1 784,020 + -0.5 784,022 + -0.1 784,022 + +0.5 784,022 + +0.1 784,055 + -0.0 784,142 + MMP_RS04125 0.21 -0.2 784,504 + MMP_RS04125 0.83 +0.0 784,513 + MMP_RS04125 0.85 +0.2 784,534 - MMP_RS04125 0.88 -0.8 784,547 + +0.6 784,573 - +0.3 784,576 + -1.0 784,576 + -0.6 784,610 + -1.0 784,649 - -0.9 784,650 + -0.4 784,653 - +0.1 784,658 - +0.7 784,671 - +0.2 784,765 + -1.4 784,823 - MMP_RS04130 0.12 -0.2 784,823 - MMP_RS04130 0.12 -0.7 784,823 - MMP_RS04130 0.12 -0.4 784,824 + MMP_RS04130 0.12 +0.3 784,824 + MMP_RS04130 0.12 -0.5 784,824 + MMP_RS04130 0.12 -0.5 784,844 + MMP_RS04130 0.14 -0.0 784,873 + MMP_RS04130 0.17 -1.4 784,914 - MMP_RS04130 0.21 -0.3 784,914 - MMP_RS04130 0.21 +1.3 784,970 - MMP_RS04130 0.27 -1.1 785,020 + MMP_RS04130 0.32 -0.2 785,020 + MMP_RS04130 0.32 +0.6 785,073 - MMP_RS04130 0.37 +0.3 785,074 + MMP_RS04130 0.38 +0.0 785,176 - MMP_RS04130 0.48 -2.5 785,176 - MMP_RS04130 0.48 -0.2 785,176 - MMP_RS04130 0.48 -2.4 785,176 - MMP_RS04130 0.48 -0.3 785,176 - MMP_RS04130 0.48 +0.2 785,177 + MMP_RS04130 0.48 -0.4 785,177 + MMP_RS04130 0.48 +1.5 785,177 + MMP_RS04130 0.48 -1.0 785,177 + MMP_RS04130 0.48 -0.7 785,177 + MMP_RS04130 0.48 -1.3 785,181 + MMP_RS04130 0.48 -0.3 785,185 - MMP_RS04130 0.49 -0.3 785,185 - MMP_RS04130 0.49 -0.0 785,186 + MMP_RS04130 0.49 -0.1 785,186 + MMP_RS04130 0.49 -0.2 785,186 + MMP_RS04130 0.49 -0.3 785,187 - MMP_RS04130 0.49 -0.8 785,187 - MMP_RS04130 0.49 +1.0 785,188 + MMP_RS04130 0.49 -0.4 785,188 + MMP_RS04130 0.49 -0.3 785,188 + MMP_RS04130 0.49 -5.0 785,239 - MMP_RS04130 0.54 -1.0 785,250 - MMP_RS04130 0.55 -0.9 785,301 - MMP_RS04130 0.61 -0.2 785,352 - MMP_RS04130 0.66 +0.1 785,353 + MMP_RS04130 0.66 -0.4 785,385 + MMP_RS04130 0.69 +0.3 785,409 - MMP_RS04130 0.72 -1.1 785,474 - MMP_RS04130 0.78 -0.5 785,474 - MMP_RS04130 0.78 -0.3 785,474 - MMP_RS04130 0.78 -0.5 785,475 + MMP_RS04130 0.78 +0.0 785,475 + MMP_RS04130 0.78 -0.1 785,512 + MMP_RS04130 0.82 -1.1 785,537 - MMP_RS04130 0.84 -0.8 785,555 - MMP_RS04130 0.86 +0.7 785,585 - MMP_RS04130 0.89 -0.9 785,585 - MMP_RS04130 0.89 +0.4 785,609 + -0.8 785,609 + +0.4 785,658 - -0.3 785,688 + -0.9 785,698 + +0.3 785,700 - -0.0 785,700 - -0.5 785,701 + +0.3 785,731 + +0.9 785,734 - +0.7 785,811 - MMP_RS04135 0.11 +0.4 785,812 + MMP_RS04135 0.11 +0.5 785,814 + MMP_RS04135 0.11 -1.3 785,824 + MMP_RS04135 0.13 +0.1 785,934 - MMP_RS04135 0.24 +1.4 785,936 - MMP_RS04135 0.24 -0.8 786,041 - MMP_RS04135 0.35 -0.0 786,044 + MMP_RS04135 0.36 -0.2 786,064 + MMP_RS04135 0.38 +0.9 786,083 + MMP_RS04135 0.40 -0.4 786,086 + MMP_RS04135 0.40 +0.6 786,094 + MMP_RS04135 0.41 +0.9 786,116 + MMP_RS04135 0.43 -0.3 786,128 + MMP_RS04135 0.45 -1.2 786,128 + MMP_RS04135 0.45 -0.4 786,131 + MMP_RS04135 0.45 -1.7 786,355 - MMP_RS04135 0.69 -0.4 786,355 - MMP_RS04135 0.69 +0.5 786,356 + MMP_RS04135 0.69 -0.9 786,383 - MMP_RS04135 0.72 +0.3 786,532 - MMP_RS04135 0.87 -0.5 786,533 + MMP_RS04135 0.87 -2.5
Or see this region's nucleotide sequence