Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14915

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,295,680	+		LRK54_RS14910	0.32	+0.1
3,295,680	+		LRK54_RS14910	0.32	-1.1
3,295,680	+		LRK54_RS14910	0.32	-1.5
3,295,680	+		LRK54_RS14910	0.32	+1.2
3,295,680	+		LRK54_RS14910	0.32	+0.6
3,295,681	-		LRK54_RS14910	0.33	+0.3
3,295,681	-		LRK54_RS14910	0.33	+0.6
3,295,681	-		LRK54_RS14910	0.33	-0.1
3,295,687	+		LRK54_RS14910	0.33	-0.3
3,295,687	+		LRK54_RS14910	0.33	-0.9
3,295,687	+		LRK54_RS14910	0.33	-0.3
3,295,687	+		LRK54_RS14910	0.33	-0.9
3,295,687	+		LRK54_RS14910	0.33	-0.8
3,295,687	+		LRK54_RS14910	0.33	-0.2
3,295,687	+		LRK54_RS14910	0.33	-0.1
3,295,687	+		LRK54_RS14910	0.33	+0.9
3,295,687	+		LRK54_RS14910	0.33	+0.1
3,295,687	+		LRK54_RS14910	0.33	+0.9
3,295,687	+		LRK54_RS14910	0.33	-0.5
3,295,687	+		LRK54_RS14910	0.33	+0.5
3,295,687	+		LRK54_RS14910	0.33	+0.2
3,295,687	+		LRK54_RS14910	0.33	+0.3
3,295,687	+		LRK54_RS14910	0.33	-3.2
3,295,687	+		LRK54_RS14910	0.33	+0.8
3,295,687	+		LRK54_RS14910	0.33	-0.3
3,295,687	+		LRK54_RS14910	0.33	+0.5
3,295,687	+		LRK54_RS14910	0.33	-0.9
3,295,687	+		LRK54_RS14910	0.33	-0.2
3,295,687	+		LRK54_RS14910	0.33	+0.8
3,295,687	+		LRK54_RS14910	0.33	+0.2
3,295,687	+		LRK54_RS14910	0.33	-0.1
3,295,687	+		LRK54_RS14910	0.33	-0.4
3,295,687	+		LRK54_RS14910	0.33	-0.6
3,295,687	+		LRK54_RS14910	0.33	-1.0
3,295,687	+		LRK54_RS14910	0.33	-1.1
3,295,687	+		LRK54_RS14910	0.33	+0.5
3,295,688	-		LRK54_RS14910	0.33	+0.1
3,295,688	-		LRK54_RS14910	0.33	+0.2
3,295,688	-		LRK54_RS14910	0.33	-1.0
3,295,688	-		LRK54_RS14910	0.33	-0.0
3,295,688	-		LRK54_RS14910	0.33	-0.7
3,295,688	-		LRK54_RS14910	0.33	+1.8
3,295,688	-		LRK54_RS14910	0.33	-1.4
3,295,688	-		LRK54_RS14910	0.33	-0.3
3,295,688	-		LRK54_RS14910	0.33	+2.1
3,295,688	-		LRK54_RS14910	0.33	+1.1
3,295,688	-		LRK54_RS14910	0.33	-0.8
3,295,688	-		LRK54_RS14910	0.33	-0.5
3,295,688	-		LRK54_RS14910	0.33	-0.8
3,295,688	-		LRK54_RS14910	0.33	+0.8
3,295,688	-		LRK54_RS14910	0.33	-2.1
3,295,810	+		LRK54_RS14910	0.47	+0.8
3,295,810	+		LRK54_RS14910	0.47	+0.1
3,295,810	+		LRK54_RS14910	0.47	-0.0
3,295,810	+		LRK54_RS14910	0.47	-0.8
3,295,810	+		LRK54_RS14910	0.47	-0.3
3,295,811	-		LRK54_RS14910	0.47	-0.7
3,295,811	-		LRK54_RS14910	0.47	+0.9
3,295,832	+		LRK54_RS14910	0.49	-2.0
3,295,832	+		LRK54_RS14910	0.49	-0.3
3,295,832	+		LRK54_RS14910	0.49	-1.0
3,295,832	+		LRK54_RS14910	0.49	-1.0
3,295,832	+		LRK54_RS14910	0.49	+0.1
3,295,832	+		LRK54_RS14910	0.49	+0.2
3,295,832	+		LRK54_RS14910	0.49	-0.4
3,295,832	+		LRK54_RS14910	0.49	-1.9
3,295,832	+		LRK54_RS14910	0.49	-0.1
3,295,832	+		LRK54_RS14910	0.49	-0.1
3,295,832	+		LRK54_RS14910	0.49	+1.8
3,295,832	+		LRK54_RS14910	0.49	-0.5
3,295,833	-		LRK54_RS14910	0.50	-0.2
3,295,833	-		LRK54_RS14910	0.50	+0.9
3,295,833	-		LRK54_RS14910	0.50	+0.4
3,295,833	-		LRK54_RS14910	0.50	-1.0
3,295,833	-		LRK54_RS14910	0.50	-2.6
3,295,833	-		LRK54_RS14910	0.50	-0.8
3,295,833	-		LRK54_RS14910	0.50	+1.9
3,295,833	-		LRK54_RS14910	0.50	-0.8
3,295,833	-		LRK54_RS14910	0.50	-0.6
3,295,833	-		LRK54_RS14910	0.50	+0.1
3,295,833	-		LRK54_RS14910	0.50	-0.5
3,295,833	-		LRK54_RS14910	0.50	-0.5
3,295,833	-		LRK54_RS14910	0.50	-1.0
3,295,880	+		LRK54_RS14910	0.55	-0.6
3,295,880	+		LRK54_RS14910	0.55	-0.2
3,295,880	+		LRK54_RS14910	0.55	-0.1
3,295,881	-		LRK54_RS14910	0.55	+1.5
3,296,185	+		LRK54_RS14910	0.89	-0.5
3,296,185	+		LRK54_RS14910	0.89	-2.1
3,296,186	-		LRK54_RS14910	0.89	-2.4
3,296,186	-		LRK54_RS14910	0.89	-0.0
3,296,186	-		LRK54_RS14910	0.89	+1.8
3,296,186	-		LRK54_RS14910	0.89	-1.0
3,296,211	+				+1.5
3,296,211	+				-0.1
3,296,212	-				+1.0
3,296,247	+				+0.1
3,296,247	+				-1.1
3,296,248	-				+0.3
3,296,281	+				+0.3
3,296,281	+				+0.3
3,296,318	+				-1.6
3,296,318	+				-1.1
3,296,319	-				+0.3
3,296,319	-				-1.0
3,296,479	+		LRK54_RS14915	0.22	+1.8
3,296,479	+		LRK54_RS14915	0.22	-0.5
3,296,479	+		LRK54_RS14915	0.22	-0.2
3,296,706	+		LRK54_RS14915	0.60	-0.9
3,296,706	+		LRK54_RS14915	0.60	-0.6
3,296,706	+		LRK54_RS14915	0.60	-0.7
3,296,706	+		LRK54_RS14915	0.60	-1.0
3,296,706	+		LRK54_RS14915	0.60	-0.8
3,296,706	+		LRK54_RS14915	0.60	-0.9
3,296,706	+		LRK54_RS14915	0.60	-0.6
3,296,706	+		LRK54_RS14915	0.60	-0.9
3,296,764	+		LRK54_RS14915	0.70	-0.3
3,296,764	+		LRK54_RS14915	0.70	-3.8
3,296,764	+		LRK54_RS14915	0.70	-1.7
3,296,764	+		LRK54_RS14915	0.70	-0.6
3,296,764	+		LRK54_RS14915	0.70	-0.0
3,296,764	+		LRK54_RS14915	0.70	-2.1
3,296,764	+		LRK54_RS14915	0.70	+1.8
3,296,764	+		LRK54_RS14915	0.70	+1.0
3,296,764	+		LRK54_RS14915	0.70	-1.8
3,296,764	+		LRK54_RS14915	0.70	-1.5
3,296,765	-		LRK54_RS14915	0.70	-0.6
3,296,960	-				+0.4
3,296,960	-				-1.0
3,297,231	+		LRK54_RS14920	0.65	-0.5
3,297,231	+		LRK54_RS14920	0.65	-0.9
3,297,231	+		LRK54_RS14920	0.65	-0.0
3,297,231	+		LRK54_RS14920	0.65	+0.6
3,297,231	+		LRK54_RS14920	0.65	-0.3
3,297,231	+		LRK54_RS14920	0.65	+0.1
3,297,231	+		LRK54_RS14920	0.65	+0.1
3,297,231	+		LRK54_RS14920	0.65	-1.4
3,297,231	+		LRK54_RS14920	0.65	-0.6
3,297,231	+		LRK54_RS14920	0.65	+0.2
3,297,231	+		LRK54_RS14920	0.65	+1.5
3,297,232	-		LRK54_RS14920	0.66	+0.1
3,297,232	-		LRK54_RS14920	0.66	-0.0
3,297,232	-		LRK54_RS14920	0.66	-1.3
3,297,232	-		LRK54_RS14920	0.66	+1.6
3,297,232	-		LRK54_RS14920	0.66	-0.2
3,297,232	-		LRK54_RS14920	0.66	-1.4
3,297,232	-		LRK54_RS14920	0.66	-1.8
3,297,232	-		LRK54_RS14920	0.66	-0.2
3,297,232	-		LRK54_RS14920	0.66	+0.4
3,297,232	-		LRK54_RS14920	0.66	-0.6
3,297,232	-		LRK54_RS14920	0.66	-0.2
3,297,232	-		LRK54_RS14920	0.66	+0.6
3,297,406	+				-0.3
3,297,406	+				-2.4
3,297,406	+				+0.8
3,297,406	+				-1.9
3,297,406	+				-0.6
3,297,406	+				-1.4
3,297,406	+				+0.1
3,297,406	+				-0.1
3,297,406	+				+0.4
3,297,407	-				-1.0
3,297,407	-				+0.5
3,297,407	-				+1.2
3,297,407	-				-1.2
3,297,407	-				+1.2
3,297,407	-				-1.0
3,297,407	-				-1.3
3,297,407	-				-0.5
3,297,407	-				+0.3
3,297,407	-				+1.7
3,297,407	-				-0.1
3,297,635	+		LRK54_RS14925	0.27	-0.2
3,297,636	-		LRK54_RS14925	0.27	-0.2
3,297,833	+		LRK54_RS14925	0.58	+2.2
3,297,833	+		LRK54_RS14925	0.58	-1.4
3,297,833	+		LRK54_RS14925	0.58	+1.0
3,297,833	+		LRK54_RS14925	0.58	+0.1
3,297,833	+		LRK54_RS14925	0.58	-0.6
3,297,833	+		LRK54_RS14925	0.58	+1.6
3,297,833	+		LRK54_RS14925	0.58	-0.6
3,297,833	+		LRK54_RS14925	0.58	-0.6
3,297,833	+		LRK54_RS14925	0.58	+1.8
3,297,833	+		LRK54_RS14925	0.58	+0.6
3,297,833	+		LRK54_RS14925	0.58	+1.9
3,297,833	+		LRK54_RS14925	0.58	-0.6
3,297,833	+		LRK54_RS14925	0.58	-0.1
3,297,833	+		LRK54_RS14925	0.58	+0.2
3,297,834	-		LRK54_RS14925	0.58	-0.6
3,297,834	-		LRK54_RS14925	0.58	-2.2
3,297,834	-		LRK54_RS14925	0.58	+3.1
3,297,834	-		LRK54_RS14925	0.58	+0.1
3,297,834	-		LRK54_RS14925	0.58	-0.5
3,297,834	-		LRK54_RS14925	0.58	+0.2
3,297,834	-		LRK54_RS14925	0.58	+1.8
3,297,834	-		LRK54_RS14925	0.58	-0.6
3,297,834	-		LRK54_RS14925	0.58	+0.0
3,297,834	-		LRK54_RS14925	0.58	+1.8
3,297,834	-		LRK54_RS14925	0.58	-0.8
3,297,834	-		LRK54_RS14925	0.58	-1.0
3,297,834	-		LRK54_RS14925	0.58	-2.3
3,297,834	-		LRK54_RS14925	0.58	-0.1
3,297,834	-		LRK54_RS14925	0.58	-0.1
3,297,834	-		LRK54_RS14925	0.58	-0.7
3,297,834	-		LRK54_RS14925	0.58	-0.9
3,297,834	-		LRK54_RS14925	0.58	+1.7
3,297,834	-		LRK54_RS14925	0.58	-2.4
3,297,893	+		LRK54_RS14925	0.67	+1.3
3,297,893	+		LRK54_RS14925	0.67	+0.2
3,297,893	+		LRK54_RS14925	0.67	-0.2
3,297,894	-		LRK54_RS14925	0.67	-2.6
3,297,894	-		LRK54_RS14925	0.67	-0.5
3,297,894	-		LRK54_RS14925	0.67	+0.6
3,297,894	-		LRK54_RS14925	0.67	+0.4
3,297,894	-		LRK54_RS14925	0.67	-0.7
3,297,901	+		LRK54_RS14925	0.69	+0.5
3,297,902	-		LRK54_RS14925	0.69	+3.5
3,297,912	+		LRK54_RS14925	0.70	+1.8
3,297,912	+		LRK54_RS14925	0.70	+0.8
3,297,912	+		LRK54_RS14925	0.70	-1.2
3,297,912	+		LRK54_RS14925	0.70	-1.9
3,297,912	+		LRK54_RS14925	0.70	-0.2
3,297,912	+		LRK54_RS14925	0.70	+1.6
3,297,912	+		LRK54_RS14925	0.70	-0.5
3,297,912	+		LRK54_RS14925	0.70	+1.3
3,297,912	+		LRK54_RS14925	0.70	+1.1
3,297,912	+		LRK54_RS14925	0.70	-1.4
3,297,912	+		LRK54_RS14925	0.70	+2.8
3,297,912	+		LRK54_RS14925	0.70	+0.2
3,297,912	+		LRK54_RS14925	0.70	+0.4
3,297,913	-		LRK54_RS14925	0.70	-0.6
3,297,913	-		LRK54_RS14925	0.70	-1.4
3,297,913	-		LRK54_RS14925	0.70	-0.9
3,297,913	-		LRK54_RS14925	0.70	+0.2
3,297,913	-		LRK54_RS14925	0.70	-0.3
3,297,913	-		LRK54_RS14925	0.70	-0.7
3,297,913	-		LRK54_RS14925	0.70	-0.8
3,297,913	-		LRK54_RS14925	0.70	-0.2
3,297,913	-		LRK54_RS14925	0.70	+1.4
3,297,913	-		LRK54_RS14925	0.70	+0.0
3,297,913	-		LRK54_RS14925	0.70	-2.4
3,297,913	-		LRK54_RS14925	0.70	-1.8
3,297,915	+		LRK54_RS14925	0.71	+2.8
3,297,915	+		LRK54_RS14925	0.71	-0.8
3,297,915	+		LRK54_RS14925	0.71	-0.1
3,297,915	+		LRK54_RS14925	0.71	+0.6
3,297,915	+		LRK54_RS14925	0.71	+2.9
3,297,915	+		LRK54_RS14925	0.71	+0.8
3,297,915	+		LRK54_RS14925	0.71	-1.4
3,297,916	-		LRK54_RS14925	0.71	-2.7
3,297,916	-		LRK54_RS14925	0.71	-0.3
3,297,916	-		LRK54_RS14925	0.71	+0.2
3,297,916	-		LRK54_RS14925	0.71	-0.9