Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11415

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,528,468	+		LRK54_RS11410	0.18	-0.0
2,528,552	+		LRK54_RS11410	0.27	+1.7
2,528,552	+		LRK54_RS11410	0.27	-1.5
2,528,578	-		LRK54_RS11410	0.30	-0.9
2,528,578	-		LRK54_RS11410	0.30	-1.8
2,528,579	+		LRK54_RS11410	0.30	-0.2
2,528,579	+		LRK54_RS11410	0.30	+0.5
2,528,580	-		LRK54_RS11410	0.30	-0.8
2,528,584	+		LRK54_RS11410	0.30	-0.4
2,528,621	-		LRK54_RS11410	0.34	+0.4
2,528,622	+		LRK54_RS11410	0.34	+0.6
2,528,622	+		LRK54_RS11410	0.34	-0.3
2,528,629	-		LRK54_RS11410	0.35	-0.3
2,528,629	-		LRK54_RS11410	0.35	+0.3
2,528,632	-		LRK54_RS11410	0.35	-0.6
2,528,654	-		LRK54_RS11410	0.38	+0.7
2,528,662	+		LRK54_RS11410	0.39	+0.7
2,528,662	+		LRK54_RS11410	0.39	-0.7
2,528,663	-		LRK54_RS11410	0.39	-0.2
2,528,663	-		LRK54_RS11410	0.39	-1.3
2,528,759	+		LRK54_RS11410	0.49	+1.0
2,528,761	+		LRK54_RS11410	0.49	-1.1
2,528,761	+		LRK54_RS11410	0.49	+0.5
2,528,761	+		LRK54_RS11410	0.49	-0.5
2,528,761	+		LRK54_RS11410	0.49	-0.2
2,528,762	-		LRK54_RS11410	0.49	+0.0
2,528,762	-		LRK54_RS11410	0.49	-0.8
2,528,778	+		LRK54_RS11410	0.51	+1.7
2,528,894	+		LRK54_RS11410	0.64	+0.6
2,528,894	+		LRK54_RS11410	0.64	+0.7
2,528,902	-		LRK54_RS11410	0.65	+0.1
2,528,976	+		LRK54_RS11410	0.72	-0.6
2,528,977	-		LRK54_RS11410	0.73	-0.2
2,528,979	+		LRK54_RS11410	0.73	+0.0
2,528,979	+		LRK54_RS11410	0.73	-1.8
2,528,981	+		LRK54_RS11410	0.73	+0.1
2,528,981	+		LRK54_RS11410	0.73	-0.2
2,528,982	-		LRK54_RS11410	0.73	-1.0
2,528,982	-		LRK54_RS11410	0.73	-0.6
2,528,982	-		LRK54_RS11410	0.73	+0.8
2,528,982	-		LRK54_RS11410	0.73	-0.4
2,529,040	+		LRK54_RS11410	0.79	-0.5
2,529,042	+		LRK54_RS11410	0.80	+0.1
2,529,042	+		LRK54_RS11410	0.80	+0.2
2,529,043	-		LRK54_RS11410	0.80	-1.8
2,529,047	+		LRK54_RS11410	0.80	-0.3
2,529,047	+		LRK54_RS11410	0.80	+0.0
2,529,048	-		LRK54_RS11410	0.80	+0.4
2,529,048	-		LRK54_RS11410	0.80	-0.5
2,529,055	+		LRK54_RS11410	0.81	+1.1
2,529,079	+		LRK54_RS11410	0.84	-0.4
2,529,148	+				+0.6
2,529,148	+				-0.2
2,529,149	-				+0.9
2,529,159	+				-1.1
2,529,159	+				+1.0
2,529,160	-				-0.7
2,529,187	+				+2.2
2,529,187	+				-0.6
2,529,188	-				-0.5
2,529,188	-				+1.1
2,529,188	-				-0.1
2,529,188	-				-0.7
2,529,188	-				-0.2
2,529,193	+				-1.1
2,529,218	-				-1.5
2,529,251	-				+0.7
2,529,289	+				-1.5
2,529,289	+				-0.2
2,529,289	+				-1.1
2,529,290	-				-0.6
2,529,290	-				-0.6
2,529,290	-				-1.0
2,529,290	-				+0.3
2,529,294	+				+0.4
2,529,295	-				-0.4
2,529,301	+				-0.5
2,529,302	-				-1.3
2,529,302	-				-1.2
2,529,327	+				+0.0
2,529,327	+				+0.6
2,529,327	+				-0.7
2,529,327	+				-0.1
2,529,328	-				+0.7
2,529,328	-				-1.4
2,529,328	-				+0.5
2,529,328	-				-0.1
2,529,328	-				+0.5
2,529,328	-				-0.8
2,529,328	-				+0.6
2,529,331	+				+0.4
2,529,331	+				-0.9
2,529,331	+				-0.5
2,529,331	+				-0.2
2,529,332	-				-1.2
2,529,332	-				+0.0
2,529,367	-				+0.4
2,529,427	+				+2.7
2,529,427	+				-0.5
2,529,435	-				-3.1
2,529,453	-				-2.1
2,529,567	-				-0.9
2,529,567	-				+1.1
2,529,590	+				-2.1
2,529,590	+				-0.7
2,529,590	+				-0.9
2,529,591	-				-1.8
2,529,639	-		LRK54_RS11415	0.12	-1.1
2,529,669	+		LRK54_RS11415	0.14	-1.8
2,529,669	+		LRK54_RS11415	0.14	-0.3
2,529,669	+		LRK54_RS11415	0.14	-1.2
2,529,669	+		LRK54_RS11415	0.14	-2.0
2,529,670	-		LRK54_RS11415	0.14	-2.3
2,529,670	-		LRK54_RS11415	0.14	-1.3
2,529,670	-		LRK54_RS11415	0.14	-0.9
2,529,670	-		LRK54_RS11415	0.14	-0.8
2,529,670	-		LRK54_RS11415	0.14	-0.5
2,529,670	-		LRK54_RS11415	0.14	-3.1
2,529,670	-		LRK54_RS11415	0.14	+0.1
2,529,670	-		LRK54_RS11415	0.14	-1.3
2,529,670	-		LRK54_RS11415	0.14	-0.5
2,529,670	-		LRK54_RS11415	0.14	-2.2
2,529,671	+		LRK54_RS11415	0.14	-1.8
2,529,671	+		LRK54_RS11415	0.14	-1.1
2,529,672	-		LRK54_RS11415	0.14	-0.3
2,529,672	-		LRK54_RS11415	0.14	+1.0
2,529,672	-		LRK54_RS11415	0.14	+0.7
2,529,672	-		LRK54_RS11415	0.14	-0.9
2,529,776	+		LRK54_RS11415	0.21	+0.4
2,529,776	+		LRK54_RS11415	0.21	+1.0
2,529,776	+		LRK54_RS11415	0.21	-0.1
2,529,777	-		LRK54_RS11415	0.21	-1.2
2,529,777	-		LRK54_RS11415	0.21	-1.9
2,529,777	-		LRK54_RS11415	0.21	-1.5
2,529,777	-		LRK54_RS11415	0.21	-1.6
2,529,777	-		LRK54_RS11415	0.21	-2.3
2,529,777	-		LRK54_RS11415	0.21	+1.1
2,529,811	+		LRK54_RS11415	0.24	-0.9
2,529,830	+		LRK54_RS11415	0.25	+1.0
2,529,830	+		LRK54_RS11415	0.25	+0.1
2,529,830	+		LRK54_RS11415	0.25	-1.9
2,529,831	-		LRK54_RS11415	0.25	-0.5
2,529,831	-		LRK54_RS11415	0.25	-2.2
2,529,854	+		LRK54_RS11415	0.26	-0.6
2,529,854	+		LRK54_RS11415	0.26	+1.7
2,529,855	-		LRK54_RS11415	0.26	+0.6
2,529,855	-		LRK54_RS11415	0.26	-1.3
2,529,855	-		LRK54_RS11415	0.26	+0.1
2,529,855	-		LRK54_RS11415	0.26	-1.7
2,529,855	-		LRK54_RS11415	0.26	+1.1
2,529,968	+		LRK54_RS11415	0.34	-0.6
2,529,968	+		LRK54_RS11415	0.34	-0.9
2,529,968	+		LRK54_RS11415	0.34	-0.6
2,529,968	+		LRK54_RS11415	0.34	+1.4
2,529,969	-		LRK54_RS11415	0.34	-1.6
2,529,969	-		LRK54_RS11415	0.34	-2.3
2,530,007	+		LRK54_RS11415	0.37	-2.8
2,530,007	+		LRK54_RS11415	0.37	-0.8
2,530,008	-		LRK54_RS11415	0.37	+0.1
2,530,044	-		LRK54_RS11415	0.39	-0.9
2,530,044	-		LRK54_RS11415	0.39	+1.3
2,530,070	+		LRK54_RS11415	0.41	-0.1
2,530,070	+		LRK54_RS11415	0.41	-0.9
2,530,169	+		LRK54_RS11415	0.48	-0.4
2,530,169	+		LRK54_RS11415	0.48	-2.5
2,530,169	+		LRK54_RS11415	0.48	+0.1
2,530,169	+		LRK54_RS11415	0.48	-0.7
2,530,169	+		LRK54_RS11415	0.48	-2.5
2,530,169	+		LRK54_RS11415	0.48	-0.4
2,530,169	+		LRK54_RS11415	0.48	-1.3
2,530,169	+		LRK54_RS11415	0.48	+0.1
2,530,169	+		LRK54_RS11415	0.48	+1.1
2,530,169	+		LRK54_RS11415	0.48	-1.8
2,530,169	+		LRK54_RS11415	0.48	-2.1
2,530,169	+		LRK54_RS11415	0.48	+0.3
2,530,170	-		LRK54_RS11415	0.48	-1.1
2,530,170	-		LRK54_RS11415	0.48	+0.7
2,530,170	-		LRK54_RS11415	0.48	-0.3
2,530,170	-		LRK54_RS11415	0.48	-0.9
2,530,170	-		LRK54_RS11415	0.48	-1.1
2,530,170	-		LRK54_RS11415	0.48	+0.1
2,530,170	-		LRK54_RS11415	0.48	+0.1
2,530,170	-		LRK54_RS11415	0.48	-1.1
2,530,170	-		LRK54_RS11415	0.48	+1.1
2,530,170	-		LRK54_RS11415	0.48	-1.1
2,530,250	+		LRK54_RS11415	0.53	+0.5
2,530,250	+		LRK54_RS11415	0.53	+0.3
2,530,283	+		LRK54_RS11415	0.55	-0.6
2,530,283	+		LRK54_RS11415	0.55	-1.3
2,530,283	+		LRK54_RS11415	0.55	+0.7
2,530,283	+		LRK54_RS11415	0.55	+0.7
2,530,283	+		LRK54_RS11415	0.55	+0.1
2,530,283	+		LRK54_RS11415	0.55	+1.7
2,530,283	+		LRK54_RS11415	0.55	+0.6
2,530,283	+		LRK54_RS11415	0.55	-0.2
2,530,283	+		LRK54_RS11415	0.55	-0.0
2,530,283	+		LRK54_RS11415	0.55	+0.5
2,530,283	+		LRK54_RS11415	0.55	+0.5
2,530,283	+		LRK54_RS11415	0.55	-2.2
2,530,283	+		LRK54_RS11415	0.55	-0.3
2,530,284	-		LRK54_RS11415	0.56	-0.4
2,530,284	-		LRK54_RS11415	0.56	-0.5
2,530,284	-		LRK54_RS11415	0.56	+0.5
2,530,284	-		LRK54_RS11415	0.56	+0.4
2,530,284	-		LRK54_RS11415	0.56	+0.7
2,530,284	-		LRK54_RS11415	0.56	-1.8
2,530,284	-		LRK54_RS11415	0.56	-1.1
2,530,289	+		LRK54_RS11415	0.56	-0.5
2,530,289	+		LRK54_RS11415	0.56	-1.5
2,530,289	+		LRK54_RS11415	0.56	+0.7
2,530,289	+		LRK54_RS11415	0.56	-0.7
2,530,289	+		LRK54_RS11415	0.56	-1.3
2,530,289	+		LRK54_RS11415	0.56	-2.0
2,530,289	+		LRK54_RS11415	0.56	+0.6
2,530,289	+		LRK54_RS11415	0.56	-1.1
2,530,289	+		LRK54_RS11415	0.56	-1.5
2,530,289	+		LRK54_RS11415	0.56	-3.8
2,530,289	+		LRK54_RS11415	0.56	-2.5
2,530,289	+		LRK54_RS11415	0.56	-1.0
2,530,289	+		LRK54_RS11415	0.56	-1.9
2,530,289	+		LRK54_RS11415	0.56	+0.1
2,530,289	+		LRK54_RS11415	0.56	-0.1
2,530,289	+		LRK54_RS11415	0.56	+1.5
2,530,289	+		LRK54_RS11415	0.56	-0.6
2,530,289	+		LRK54_RS11415	0.56	-0.6
2,530,289	+		LRK54_RS11415	0.56	-2.6
2,530,289	+		LRK54_RS11415	0.56	+0.0
2,530,289	+		LRK54_RS11415	0.56	-0.9
2,530,289	+		LRK54_RS11415	0.56	-2.4
2,530,289	+		LRK54_RS11415	0.56	+0.4
2,530,290	-		LRK54_RS11415	0.56	+0.5
2,530,290	-		LRK54_RS11415	0.56	-3.3
2,530,290	-		LRK54_RS11415	0.56	-0.3
2,530,290	-		LRK54_RS11415	0.56	-1.8
2,530,290	-		LRK54_RS11415	0.56	-2.7
2,530,290	-		LRK54_RS11415	0.56	-0.9
2,530,290	-		LRK54_RS11415	0.56	+0.5
2,530,562	+		LRK54_RS11415	0.74	-0.2
2,530,563	-		LRK54_RS11415	0.74	+4.0
2,530,622	+		LRK54_RS11415	0.78	-0.1
2,530,622	+		LRK54_RS11415	0.78	-3.1
2,530,622	+		LRK54_RS11415	0.78	+0.7
2,530,622	+		LRK54_RS11415	0.78	-0.3
2,530,622	+		LRK54_RS11415	0.78	+0.3
2,530,622	+		LRK54_RS11415	0.78	-1.9
2,530,622	+		LRK54_RS11415	0.78	-1.5
2,530,622	+		LRK54_RS11415	0.78	-1.8
2,530,622	+		LRK54_RS11415	0.78	+1.7
2,530,623	-		LRK54_RS11415	0.79	+1.7
2,530,623	-		LRK54_RS11415	0.79	+1.4
2,530,623	-		LRK54_RS11415	0.79	-2.0
2,530,623	-		LRK54_RS11415	0.79	+1.4
2,530,623	-		LRK54_RS11415	0.79	-2.1
2,530,623	-		LRK54_RS11415	0.79	+1.0
2,530,623	-		LRK54_RS11415	0.79	+1.7
2,530,623	-		LRK54_RS11415	0.79	+3.3
2,530,623	-		LRK54_RS11415	0.79	-1.1
2,530,623	-		LRK54_RS11415	0.79	-1.9
2,530,623	-		LRK54_RS11415	0.79	-1.6
2,530,658	-		LRK54_RS11415	0.81	-0.9
2,530,715	+		LRK54_RS11415	0.85	-0.6
2,530,715	+		LRK54_RS11415	0.85	-0.9
2,530,715	+		LRK54_RS11415	0.85	-2.5
2,530,715	+		LRK54_RS11415	0.85	-0.3
2,530,715	+		LRK54_RS11415	0.85	+0.1
2,530,715	+		LRK54_RS11415	0.85	-2.8
2,530,715	+		LRK54_RS11415	0.85	-1.2
2,530,715	+		LRK54_RS11415	0.85	+0.1
2,530,716	-		LRK54_RS11415	0.85	-2.3
2,530,716	-		LRK54_RS11415	0.85	-1.5
2,530,716	-		LRK54_RS11415	0.85	-1.9
2,530,730	+		LRK54_RS11415	0.86	-0.7
2,530,730	+		LRK54_RS11415	0.86	-0.9
2,530,730	+		LRK54_RS11415	0.86	-1.5
2,530,731	-		LRK54_RS11415	0.86	-0.3
2,530,731	-		LRK54_RS11415	0.86	-0.1
2,530,731	-		LRK54_RS11415	0.86	+1.1
2,530,731	-		LRK54_RS11415	0.86	-2.3
2,530,731	-		LRK54_RS11415	0.86	-0.3
2,530,731	-		LRK54_RS11415	0.86	-0.3
2,530,731	-		LRK54_RS11415	0.86	+0.7
2,530,847	+				-0.4
2,530,847	+				-2.0
2,530,847	+				-1.5
2,530,848	-				-0.3
2,530,937	+				-1.0
2,530,937	+				-1.3
2,530,937	+				-0.9
2,530,937	+				+0.0
2,530,937	+				-1.2
2,530,937	+				-0.3
2,530,937	+				+0.9
2,530,937	+				-0.9
2,530,937	+				-2.3
2,530,937	+				-1.0
2,530,937	+				+1.2
2,530,937	+				-1.1
2,530,937	+				+0.7
2,530,937	+				+1.0
2,530,937	+				-0.0
2,530,937	+				-2.8
2,530,937	+				-1.5
2,530,937	+				-1.6
2,530,937	+				-0.1
2,530,938	-				+0.1
2,530,938	-				-0.3
2,530,938	-				+0.1
2,530,938	-				+0.2
2,530,938	-				+0.7
2,530,938	-				-1.0
2,530,938	-				+0.7
2,530,938	-				-0.0
2,530,938	-				+0.3
2,530,938	-				+1.1
2,530,938	-				-0.4
2,530,938	-				-0.1
2,530,938	-				-0.9
2,530,938	-				-1.9
2,531,021	+				+1.4
2,531,021	+				+0.9
2,531,021	+				-0.8
2,531,021	+				-0.2
2,531,021	+				-1.8
2,531,022	-				-0.1
2,531,022	-				-0.5
2,531,022	-				-0.9
2,531,022	-				-1.1
2,531,022	-				+0.3
2,531,022	-				+1.4
2,531,022	-				-0.0
2,531,022	-				-0.6
2,531,044	+				+1.3
2,531,044	+				+1.3
2,531,044	+				-0.1
2,531,044	+				-0.9
2,531,044	+				+0.8
2,531,044	+				-0.5
2,531,044	+				-0.3
2,531,044	+				-1.0
2,531,044	+				-0.1
2,531,044	+				-0.8
2,531,044	+				-0.5
2,531,044	+				-2.0
2,531,045	-				+0.1
2,531,045	-				+1.3
2,531,045	-				+0.4
2,531,045	-				-0.5
2,531,045	-				-0.3
2,531,045	-				+1.7
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