Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08795

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,914,132	+		LRK54_RS08785	0.67	+0.3
1,914,132	+		LRK54_RS08785	0.67	-0.2
1,914,132	+		LRK54_RS08785	0.67	+0.7
1,914,132	+		LRK54_RS08785	0.67	-0.0
1,914,132	+		LRK54_RS08785	0.67	-1.3
1,914,133	-		LRK54_RS08785	0.67	-0.2
1,914,133	-		LRK54_RS08785	0.67	-1.2
1,914,133	-		LRK54_RS08785	0.67	+1.4
1,914,133	-		LRK54_RS08785	0.67	+0.1
1,914,133	-		LRK54_RS08785	0.67	-1.1
1,914,133	-		LRK54_RS08785	0.67	-2.1
1,914,133	-		LRK54_RS08785	0.67	+0.9
1,914,133	-		LRK54_RS08785	0.67	+0.1
1,914,133	-		LRK54_RS08785	0.67	+0.4
1,914,133	-		LRK54_RS08785	0.67	-0.5
1,914,133	-		LRK54_RS08785	0.67	-0.5
1,914,439	-				-1.3
1,914,449	+				+1.6
1,914,449	+				+1.9
1,914,449	+				+0.3
1,914,449	+				+0.6
1,914,449	+				-0.9
1,914,449	+				-2.0
1,914,449	+				+0.5
1,914,449	+				+0.6
1,914,449	+				-1.8
1,914,449	+				-0.7
1,914,449	+				+1.2
1,914,449	+				+0.8
1,914,449	+				-0.3
1,914,449	+				+0.3
1,914,449	+				+1.8
1,914,449	+				-0.1
1,914,449	+				-0.6
1,914,449	+				-0.6
1,914,449	+				+0.0
1,914,449	+				-0.7
1,914,450	-				+0.7
1,914,450	-				-0.1
1,914,450	-				+0.3
1,914,450	-				-0.9
1,914,450	-				+0.8
1,914,450	-				+0.1
1,914,450	-				+0.3
1,914,450	-				+0.1
1,914,450	-				-0.7
1,914,450	-				-1.2
1,914,450	-				+0.1
1,914,450	-				-1.8
1,914,450	-				-0.0
1,914,450	-				+1.0
1,914,578	+		LRK54_RS08790	0.13	+1.6
1,914,578	+		LRK54_RS08790	0.13	-2.8
1,914,578	+		LRK54_RS08790	0.13	-1.5
1,914,578	+		LRK54_RS08790	0.13	-0.3
1,914,578	+		LRK54_RS08790	0.13	+0.1
1,914,579	-		LRK54_RS08790	0.14	-2.0
1,914,579	-		LRK54_RS08790	0.14	+0.6
1,914,579	-		LRK54_RS08790	0.14	-2.6
1,914,728	+		LRK54_RS08790	0.48	+0.0
1,914,728	+		LRK54_RS08790	0.48	+0.2
1,914,728	+		LRK54_RS08790	0.48	-1.7
1,914,728	+		LRK54_RS08790	0.48	-1.5
1,914,728	+		LRK54_RS08790	0.48	+0.3
1,914,728	+		LRK54_RS08790	0.48	+1.6
1,914,728	+		LRK54_RS08790	0.48	+0.4
1,914,728	+		LRK54_RS08790	0.48	-0.5
1,914,728	+		LRK54_RS08790	0.48	-0.2
1,914,728	+		LRK54_RS08790	0.48	+0.3
1,914,728	+		LRK54_RS08790	0.48	-0.6
1,914,729	-		LRK54_RS08790	0.48	-0.7
1,914,729	-		LRK54_RS08790	0.48	-1.5
1,914,729	-		LRK54_RS08790	0.48	+0.8
1,914,729	-		LRK54_RS08790	0.48	+1.6
1,914,729	-		LRK54_RS08790	0.48	+1.4
1,914,729	-		LRK54_RS08790	0.48	-0.1
1,914,729	-		LRK54_RS08790	0.48	-0.2
1,914,729	-		LRK54_RS08790	0.48	+0.4
1,914,729	-		LRK54_RS08790	0.48	-0.3
1,914,729	-		LRK54_RS08790	0.48	+0.2
1,914,729	-		LRK54_RS08790	0.48	+0.5
1,914,746	+		LRK54_RS08790	0.52	+1.1
1,914,746	+		LRK54_RS08790	0.52	+0.5
1,914,746	+		LRK54_RS08790	0.52	+0.8
1,914,747	-		LRK54_RS08790	0.53	+0.7
1,914,747	-		LRK54_RS08790	0.53	-0.1
1,914,747	-		LRK54_RS08790	0.53	+0.2
1,914,747	-		LRK54_RS08790	0.53	+1.1
1,914,747	-		LRK54_RS08790	0.53	-3.0
1,914,811	+		LRK54_RS08790	0.67	-1.2
1,914,812	-		LRK54_RS08790	0.68	-0.6
1,914,812	-		LRK54_RS08790	0.68	-1.4
1,914,812	-		LRK54_RS08790	0.68	-0.4
1,914,857	+		LRK54_RS08790	0.78	-1.0
1,914,857	+		LRK54_RS08790	0.78	+0.7
1,914,857	+		LRK54_RS08790	0.78	+0.7
1,914,858	-		LRK54_RS08790	0.78	+0.0
1,914,858	-		LRK54_RS08790	0.78	-0.7
1,914,858	-		LRK54_RS08790	0.78	-1.0
1,914,858	-		LRK54_RS08790	0.78	+1.0
1,914,858	-		LRK54_RS08790	0.78	+0.5
1,914,858	-		LRK54_RS08790	0.78	-0.5
1,914,858	-		LRK54_RS08790	0.78	-0.9
1,914,858	-		LRK54_RS08790	0.78	+3.2
1,914,858	-		LRK54_RS08790	0.78	-0.7
1,914,959	+				+0.3
1,914,959	+				-0.7
1,914,959	+				+0.9
1,914,959	+				+0.0
1,914,959	+				+0.7
1,914,959	+				-1.8
1,914,960	-				-0.8
1,914,960	-				-0.8
1,914,960	-				-0.3
1,914,960	-				-0.4
1,914,960	-				+0.8
1,914,960	-				+0.3
1,915,004	+				-1.4
1,915,004	+				-1.7
1,915,093	+				+0.0
1,915,093	+				+1.1
1,915,093	+				+0.4
1,915,093	+				+1.1
1,915,093	+				-0.1
1,915,093	+				+1.3
1,915,093	+				+0.2
1,915,093	+				+0.1
1,915,093	+				-0.5
1,915,093	+				+1.5
1,915,093	+				+0.6
1,915,093	+				+0.0
1,915,093	+				-0.1
1,915,093	+				+1.6
1,915,094	-				-0.6
1,915,094	-				+0.0
1,915,094	-				-0.0
1,915,094	-				+1.3
1,915,094	-				-0.3
1,915,094	-				+1.0
1,915,094	-				+0.9
1,915,094	-				-0.3
1,915,094	-				+1.0
1,915,094	-				-0.9
1,915,094	-				+0.0
1,915,094	-				-0.6
1,915,094	-				+0.3
1,915,094	-				-0.4
1,915,094	-				-0.4
1,915,094	-				-0.4
1,915,094	-				-1.1
1,915,094	-				-0.5
1,915,094	-				+0.1
1,915,095	+				+2.0
1,915,095	+				-1.3
1,915,095	+				-3.0
1,915,095	+				-0.0
1,915,095	+				-0.7
1,915,095	+				+0.5
1,915,095	+				+0.6
1,915,095	+				-0.3
1,915,095	+				+0.3
1,915,095	+				+1.6
1,915,095	+				-0.8
1,915,096	-				+0.4
1,915,096	-				+0.2
1,915,096	-				-1.4
1,915,096	-				+0.0
1,915,096	-				-2.0
1,915,096	-				-0.6
1,915,096	-				-0.2
1,915,465	-		LRK54_RS08795	0.34	-0.2
1,915,475	+		LRK54_RS08795	0.35	-0.8
1,915,475	+		LRK54_RS08795	0.35	-0.9
1,915,475	+		LRK54_RS08795	0.35	-0.1
1,915,475	+		LRK54_RS08795	0.35	-1.0
1,915,475	+		LRK54_RS08795	0.35	-1.3
1,915,476	-		LRK54_RS08795	0.35	-2.6
1,915,476	-		LRK54_RS08795	0.35	-0.8
1,915,476	-		LRK54_RS08795	0.35	-1.1
1,915,476	-		LRK54_RS08795	0.35	-0.5
1,915,720	+		LRK54_RS08795	0.57	+0.6
1,915,720	+		LRK54_RS08795	0.57	-0.4
1,915,721	-		LRK54_RS08795	0.57	-1.0
1,915,904	+		LRK54_RS08795	0.74	-0.7
1,915,904	+		LRK54_RS08795	0.74	+0.1
1,915,904	+		LRK54_RS08795	0.74	-0.5
1,915,905	-		LRK54_RS08795	0.74	-0.1
1,915,905	-		LRK54_RS08795	0.74	-0.4
1,915,905	-		LRK54_RS08795	0.74	-0.7
1,915,998	+		LRK54_RS08795	0.82	-3.0
1,915,999	-		LRK54_RS08795	0.82	+0.4
1,915,999	-		LRK54_RS08795	0.82	-0.1
1,916,099	+				-0.9
1,916,118	+				+0.4
1,916,118	+				-0.3
1,916,118	+				+1.9
1,916,118	+				-0.3
1,916,118	+				-0.8
1,916,118	+				-0.0
1,916,118	+				-0.4
1,916,119	-				-0.7
1,916,119	-				+0.4
1,916,119	-				-0.0
1,916,119	-				-0.7
1,916,119	-				-0.1
1,916,119	-				-0.6
1,916,119	-				-0.4
1,916,119	-				-0.6
1,916,119	-				+0.7
1,916,119	-				-1.7
1,916,119	-				-0.3
1,916,119	-				+0.6
1,916,119	-				-0.7
1,916,192	+				+0.0
1,916,192	+				-0.0
1,916,192	+				-0.2
1,916,192	+				-1.4
1,916,192	+				+0.3
1,916,192	+				-0.6
1,916,192	+				-0.2
1,916,192	+				+0.1
1,916,192	+				+1.6
1,916,192	+				-0.7
1,916,192	+				+0.3
1,916,192	+				+0.0
1,916,192	+				+1.2
1,916,192	+				-0.2
1,916,192	+				+0.9
1,916,192	+				-0.1
1,916,193	-				-0.6
1,916,193	-				-0.3
1,916,193	-				+0.5
1,916,193	-				-0.6
1,916,193	-				+0.8
1,916,193	-				-1.6
1,916,193	-				-0.8
1,916,193	-				+1.6
1,916,193	-				-0.7
1,916,193	-				-1.2
1,916,193	-				+0.3
1,916,193	-				+2.9
1,916,257	+				-1.1
1,916,257	+				-0.4
1,916,257	+				+0.4
1,916,342	+				-0.6
1,916,342	+				+0.6
1,916,343	-				-0.2
1,916,343	-				-2.5
1,916,343	-				-0.9
1,916,343	-				-0.2
1,916,344	+				+0.0
1,916,344	+				-0.8
1,916,344	+				+0.7
1,916,345	-				-2.4
1,916,345	-				+1.8
1,916,345	-				+2.6
1,916,386	+				-0.2
1,916,387	-				-0.4
1,916,526	+				+1.0
1,916,526	+				+0.6
1,916,537	+				+0.1
1,916,537	+				-0.9
1,916,557	+				-2.0
1,916,557	+				-0.6
1,916,557	+				-0.7
1,916,557	+				+0.7
1,916,557	+				-0.1
1,916,558	-				+0.2
1,916,558	-				-0.4
1,916,558	-				-1.0
1,916,770	+		LRK54_RS08800	0.57	+0.3
1,916,770	+		LRK54_RS08800	0.57	+0.5
1,916,770	+		LRK54_RS08800	0.57	+0.6
1,916,771	-		LRK54_RS08800	0.58	+0.0
1,916,771	-		LRK54_RS08800	0.58	+0.2
1,916,771	-		LRK54_RS08800	0.58	+3.0
1,916,771	-		LRK54_RS08800	0.58	-1.9
1,916,771	-		LRK54_RS08800	0.58	+0.3
1,916,771	-		LRK54_RS08800	0.58	-2.5
1,916,771	-		LRK54_RS08800	0.58	-0.4
1,916,771	-		LRK54_RS08800	0.58	+0.1
1,916,787	+		LRK54_RS08800	0.62	+0.6
1,916,788	-		LRK54_RS08800	0.62	+0.2
1,916,816	+		LRK54_RS08800	0.69	+0.0
1,916,816	+		LRK54_RS08800	0.69	+1.4
1,916,816	+		LRK54_RS08800	0.69	+1.2
1,916,817	-		LRK54_RS08800	0.69	-0.6
1,916,817	-		LRK54_RS08800	0.69	-0.1
1,916,880	+		LRK54_RS08800	0.84	-0.4
1,916,880	+		LRK54_RS08800	0.84	-1.1
1,916,881	-		LRK54_RS08800	0.85	-0.2
1,916,937	+				-0.3
1,916,937	+				-0.3
1,916,937	+				-1.2
1,916,938	-				+0.3
1,916,938	-				-0.7
1,916,938	-				+0.7
1,916,940	-				+0.3
1,916,958	-				-0.2
1,916,964	-				-0.7