Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17885 and HMPREF1058_RS17880 are separated by 21 nucleotides HMPREF1058_RS17880 and HMPREF1058_RS17875 are separated by 93 nucleotides HMPREF1058_RS17875 and HMPREF1058_RS17870 are separated by 208 nucleotides
HMPREF1058_RS17885: HMPREF1058_RS17885 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 308,058 to 310,271
_RS17885
HMPREF1058_RS17880: HMPREF1058_RS17880 - diacylglycerol kinase family protein, at 310,293 to 310,646
_RS17880
HMPREF1058_RS17875: HMPREF1058_RS17875 - DUF1573 domain-containing protein, at 310,740 to 311,153
_RS17875
HMPREF1058_RS17870: HMPREF1058_RS17870 - metallophosphoesterase, at 311,362 to 312,168
_RS17870
Position (kb) 310
311 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 309.297 kb on + strand, within HMPREF1058_RS17885 at 309.298 kb on - strand, within HMPREF1058_RS17885 at 309.535 kb on + strand, within HMPREF1058_RS17885 at 309.536 kb on - strand, within HMPREF1058_RS17885 at 309.646 kb on - strand, within HMPREF1058_RS17885 at 309.758 kb on + strand, within HMPREF1058_RS17885 at 309.885 kb on - strand, within HMPREF1058_RS17885 at 309.890 kb on + strand, within HMPREF1058_RS17885 at 309.891 kb on - strand, within HMPREF1058_RS17885 at 309.894 kb on + strand, within HMPREF1058_RS17885 at 309.895 kb on - strand, within HMPREF1058_RS17885 at 309.907 kb on + strand, within HMPREF1058_RS17885 at 309.908 kb on - strand, within HMPREF1058_RS17885 at 309.962 kb on + strand, within HMPREF1058_RS17885 at 310.078 kb on + strand at 310.078 kb on + strand at 310.094 kb on + strand at 310.094 kb on + strand at 310.192 kb on + strand at 310.199 kb on + strand at 310.223 kb on - strand at 310.286 kb on + strand at 310.286 kb on + strand at 310.325 kb on + strand at 310.329 kb on + strand, within HMPREF1058_RS17880 at 310.432 kb on + strand, within HMPREF1058_RS17880 at 310.478 kb on - strand, within HMPREF1058_RS17880 at 310.547 kb on + strand, within HMPREF1058_RS17880 at 310.709 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.765 kb on + strand at 310.766 kb on - strand at 310.777 kb on + strand at 310.851 kb on - strand, within HMPREF1058_RS17875 at 310.851 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.028 kb on - strand, within HMPREF1058_RS17875 at 311.114 kb on - strand at 311.167 kb on + strand at 311.167 kb on + strand at 311.181 kb on + strand at 311.211 kb on - strand at 311.211 kb on - strand at 311.224 kb on - strand at 311.262 kb on + strand at 311.448 kb on + strand, within HMPREF1058_RS17870 at 311.448 kb on + strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.558 kb on - strand, within HMPREF1058_RS17870 at 311.579 kb on + strand, within HMPREF1058_RS17870
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 309,297 + HMPREF1058_RS17885 0.56 -1.1 309,298 - HMPREF1058_RS17885 0.56 -1.8 309,535 + HMPREF1058_RS17885 0.67 -1.8 309,536 - HMPREF1058_RS17885 0.67 -0.5 309,646 - HMPREF1058_RS17885 0.72 -1.1 309,758 + HMPREF1058_RS17885 0.77 -1.1 309,885 - HMPREF1058_RS17885 0.83 -0.2 309,890 + HMPREF1058_RS17885 0.83 +0.5 309,891 - HMPREF1058_RS17885 0.83 +0.2 309,894 + HMPREF1058_RS17885 0.83 -2.1 309,895 - HMPREF1058_RS17885 0.83 +1.2 309,907 + HMPREF1058_RS17885 0.84 -0.4 309,908 - HMPREF1058_RS17885 0.84 +0.3 309,962 + HMPREF1058_RS17885 0.86 -0.1 310,078 + -0.4 310,078 + -1.4 310,094 + -0.6 310,094 + -2.3 310,192 + +0.1 310,199 + -0.3 310,223 - -0.4 310,286 + +0.4 310,286 + +0.1 310,325 + +0.1 310,329 + HMPREF1058_RS17880 0.10 -1.6 310,432 + HMPREF1058_RS17880 0.39 -1.0 310,478 - HMPREF1058_RS17880 0.52 +0.8 310,547 + HMPREF1058_RS17880 0.72 -2.5 310,709 + +1.2 310,738 + +0.9 310,738 + -0.3 310,738 + +1.0 310,765 + -0.3 310,766 - -0.1 310,777 + +1.6 310,851 - HMPREF1058_RS17875 0.27 -1.3 310,851 - HMPREF1058_RS17875 0.27 -0.8 311,026 - HMPREF1058_RS17875 0.69 +1.1 311,026 - HMPREF1058_RS17875 0.69 -0.4 311,028 - HMPREF1058_RS17875 0.70 +2.9 311,114 - +2.4 311,167 + -0.3 311,167 + +1.2 311,181 + -0.4 311,211 - +1.6 311,211 - -2.3 311,224 - -1.4 311,262 + -0.8 311,448 + HMPREF1058_RS17870 0.11 -0.7 311,448 + HMPREF1058_RS17870 0.11 -0.6 311,449 - HMPREF1058_RS17870 0.11 -2.0 311,449 - HMPREF1058_RS17870 0.11 -0.2 311,449 - HMPREF1058_RS17870 0.11 +0.9 311,449 - HMPREF1058_RS17870 0.11 +0.2 311,449 - HMPREF1058_RS17870 0.11 +0.5 311,558 - HMPREF1058_RS17870 0.24 +1.2 311,579 + HMPREF1058_RS17870 0.27 -0.6
Or see this region's nucleotide sequence