Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06575 and HMPREF1058_RS06570 are separated by 97 nucleotides HMPREF1058_RS06570 and HMPREF1058_RS06565 are separated by 203 nucleotides
HMPREF1058_RS06575: HMPREF1058_RS06575 - phosphate ABC transporter permease PstA, at 445,993 to 446,880
_RS06575
HMPREF1058_RS06570: HMPREF1058_RS06570 - phosphate ABC transporter ATP-binding protein, at 446,978 to 447,730
_RS06570
HMPREF1058_RS06565: HMPREF1058_RS06565 - phosphate signaling complex protein PhoU, at 447,934 to 448,635
_RS06565
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 445.983 kb on + strand at 445.987 kb on + strand at 445.988 kb on - strand at 446.081 kb on - strand at 446.085 kb on + strand, within HMPREF1058_RS06575 at 446.086 kb on - strand at 446.086 kb on - strand, within HMPREF1058_RS06575 at 446.086 kb on - strand, within HMPREF1058_RS06575 at 446.123 kb on + strand, within HMPREF1058_RS06575 at 446.125 kb on + strand, within HMPREF1058_RS06575 at 446.126 kb on - strand, within HMPREF1058_RS06575 at 446.128 kb on - strand, within HMPREF1058_RS06575 at 446.128 kb on - strand, within HMPREF1058_RS06575 at 446.197 kb on - strand, within HMPREF1058_RS06575 at 446.213 kb on + strand, within HMPREF1058_RS06575 at 446.225 kb on - strand, within HMPREF1058_RS06575 at 446.402 kb on - strand, within HMPREF1058_RS06575 at 446.459 kb on + strand, within HMPREF1058_RS06575 at 446.731 kb on + strand, within HMPREF1058_RS06575 at 446.782 kb on + strand, within HMPREF1058_RS06575 at 446.821 kb on - strand at 446.931 kb on + strand at 446.931 kb on + strand at 446.932 kb on - strand at 446.932 kb on - strand at 446.988 kb on + strand at 446.989 kb on - strand at 446.989 kb on - strand at 447.042 kb on + strand at 447.042 kb on + strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.081 kb on + strand, within HMPREF1058_RS06570 at 447.191 kb on - strand, within HMPREF1058_RS06570 at 447.191 kb on - strand, within HMPREF1058_RS06570 at 447.466 kb on - strand, within HMPREF1058_RS06570 at 447.514 kb on + strand, within HMPREF1058_RS06570 at 447.532 kb on - strand, within HMPREF1058_RS06570 at 447.563 kb on + strand, within HMPREF1058_RS06570 at 447.564 kb on - strand, within HMPREF1058_RS06570 at 447.632 kb on + strand, within HMPREF1058_RS06570 at 447.633 kb on - strand, within HMPREF1058_RS06570 at 447.633 kb on - strand, within HMPREF1058_RS06570 at 447.634 kb on + strand, within HMPREF1058_RS06570 at 447.643 kb on + strand, within HMPREF1058_RS06570 at 447.654 kb on - strand, within HMPREF1058_RS06570 at 447.677 kb on - strand at 447.707 kb on + strand at 447.708 kb on - strand at 447.708 kb on - strand at 447.764 kb on - strand at 447.823 kb on + strand at 447.911 kb on + strand at 447.962 kb on + strand at 447.962 kb on + strand at 448.142 kb on - strand, within HMPREF1058_RS06565 at 448.190 kb on + strand, within HMPREF1058_RS06565 at 448.296 kb on + strand, within HMPREF1058_RS06565 at 448.299 kb on - strand, within HMPREF1058_RS06565 at 448.532 kb on + strand, within HMPREF1058_RS06565 at 448.533 kb on - strand, within HMPREF1058_RS06565 at 448.598 kb on + strand at 448.654 kb on - strand at 448.673 kb on - strand at 448.674 kb on + strand at 448.676 kb on + strand at 448.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 445,983 + -0.4 445,987 + -2.0 445,988 - -1.5 446,081 - +0.7 446,085 + HMPREF1058_RS06575 0.10 +0.4 446,086 - -0.4 446,086 - HMPREF1058_RS06575 0.10 +2.7 446,086 - HMPREF1058_RS06575 0.10 +0.1 446,123 + HMPREF1058_RS06575 0.15 +4.1 446,125 + HMPREF1058_RS06575 0.15 -0.5 446,126 - HMPREF1058_RS06575 0.15 -0.4 446,128 - HMPREF1058_RS06575 0.15 -0.4 446,128 - HMPREF1058_RS06575 0.15 +0.7 446,197 - HMPREF1058_RS06575 0.23 -1.4 446,213 + HMPREF1058_RS06575 0.25 -0.8 446,225 - HMPREF1058_RS06575 0.26 -2.1 446,402 - HMPREF1058_RS06575 0.46 -1.1 446,459 + HMPREF1058_RS06575 0.52 +0.6 446,731 + HMPREF1058_RS06575 0.83 -2.6 446,782 + HMPREF1058_RS06575 0.89 -0.7 446,821 - -1.4 446,931 + -1.0 446,931 + +1.1 446,932 - -2.4 446,932 - -0.8 446,988 + +0.6 446,989 - -1.4 446,989 - -0.9 447,042 + +1.0 447,042 + -1.4 447,043 - +0.7 447,043 - +0.2 447,043 - +2.0 447,043 - +1.2 447,081 + HMPREF1058_RS06570 0.14 +0.0 447,191 - HMPREF1058_RS06570 0.28 +0.3 447,191 - HMPREF1058_RS06570 0.28 -0.7 447,466 - HMPREF1058_RS06570 0.65 -1.7 447,514 + HMPREF1058_RS06570 0.71 -1.6 447,532 - HMPREF1058_RS06570 0.74 -0.3 447,563 + HMPREF1058_RS06570 0.78 -1.4 447,564 - HMPREF1058_RS06570 0.78 -0.5 447,632 + HMPREF1058_RS06570 0.87 -0.8 447,633 - HMPREF1058_RS06570 0.87 -1.0 447,633 - HMPREF1058_RS06570 0.87 -2.4 447,634 + HMPREF1058_RS06570 0.87 -0.8 447,643 + HMPREF1058_RS06570 0.88 -1.3 447,654 - HMPREF1058_RS06570 0.90 +2.0 447,677 - -2.1 447,707 + +1.6 447,708 - +0.2 447,708 - +0.3 447,764 - -0.1 447,823 + +0.7 447,911 + -0.3 447,962 + +0.9 447,962 + +0.4 448,142 - HMPREF1058_RS06565 0.30 +2.0 448,190 + HMPREF1058_RS06565 0.36 -2.9 448,296 + HMPREF1058_RS06565 0.52 -1.0 448,299 - HMPREF1058_RS06565 0.52 -1.8 448,532 + HMPREF1058_RS06565 0.85 -0.8 448,533 - HMPREF1058_RS06565 0.85 +0.7 448,598 + +2.8 448,654 - +1.8 448,673 - +0.7 448,674 + +0.1 448,676 + +2.0 448,676 + +0.1
Or see this region's nucleotide sequence