Experiment: McCas_formate_complete Thioridazine 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02445 and MMP_RS02450 are separated by 273 nucleotides MMP_RS02450 and MMP_RS02455 are separated by 12 nucleotides
MMP_RS02445: MMP_RS02445 - putative DNA binding domain-containing protein, at 456,701 to 458,044
_RS02445
MMP_RS02450: MMP_RS02450 - hypothetical protein, at 458,318 to 458,512
_RS02450
MMP_RS02455: MMP_RS02455 - hypothetical protein, at 458,525 to 459,142
_RS02455
Position (kb) 456
457
458
459 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 455.803 kb on - strand at 455.804 kb on + strand at 455.813 kb on - strand at 455.813 kb on - strand at 455.814 kb on + strand at 455.817 kb on - strand at 455.817 kb on - strand at 455.817 kb on - strand at 455.818 kb on + strand at 455.822 kb on - strand at 455.822 kb on - strand at 455.822 kb on - strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.825 kb on + strand at 455.825 kb on + strand at 455.825 kb on + strand at 455.827 kb on - strand at 455.835 kb on - strand at 455.835 kb on - strand at 455.836 kb on + strand at 455.836 kb on + strand at 455.836 kb on + strand at 455.836 kb on + strand at 455.840 kb on + strand at 455.856 kb on + strand at 455.859 kb on - strand at 455.860 kb on + strand at 455.860 kb on + strand at 455.864 kb on - strand at 455.865 kb on + strand at 455.901 kb on - strand at 456.003 kb on - strand at 456.009 kb on - strand at 456.021 kb on + strand at 456.027 kb on - strand at 456.028 kb on + strand at 456.064 kb on - strand at 456.065 kb on + strand at 456.065 kb on + strand at 456.119 kb on - strand at 456.119 kb on - strand at 456.128 kb on - strand at 456.128 kb on - strand at 456.128 kb on - strand at 456.173 kb on - strand at 456.202 kb on + strand at 456.239 kb on - strand at 456.239 kb on - strand at 456.240 kb on + strand at 456.240 kb on + strand at 456.240 kb on + strand at 456.245 kb on + strand at 456.274 kb on + strand at 456.274 kb on + strand at 456.328 kb on - strand at 456.331 kb on + strand at 456.475 kb on - strand at 456.493 kb on - strand at 456.494 kb on + strand at 456.550 kb on - strand at 456.551 kb on + strand at 456.554 kb on - strand at 456.554 kb on - strand at 456.557 kb on + strand at 456.557 kb on + strand at 456.559 kb on + strand at 456.559 kb on + strand at 456.559 kb on + strand at 456.559 kb on + strand at 456.559 kb on + strand at 456.625 kb on + strand at 456.655 kb on + strand at 456.666 kb on - strand at 456.673 kb on - strand at 456.674 kb on + strand at 456.678 kb on - strand at 456.678 kb on - strand at 456.678 kb on - strand at 456.680 kb on - strand at 456.681 kb on + strand at 456.736 kb on + strand at 456.738 kb on - strand at 456.739 kb on + strand at 456.755 kb on - strand at 456.758 kb on + strand at 456.805 kb on + strand at 456.975 kb on - strand, within MMP_RS02445 at 457.028 kb on - strand, within MMP_RS02445 at 457.028 kb on - strand, within MMP_RS02445 at 457.028 kb on - strand, within MMP_RS02445 at 457.029 kb on + strand, within MMP_RS02445 at 457.229 kb on + strand, within MMP_RS02445 at 457.239 kb on - strand, within MMP_RS02445 at 457.240 kb on + strand, within MMP_RS02445 at 457.240 kb on + strand, within MMP_RS02445 at 457.243 kb on + strand, within MMP_RS02445 at 457.289 kb on + strand, within MMP_RS02445 at 457.289 kb on + strand, within MMP_RS02445 at 457.318 kb on - strand, within MMP_RS02445 at 457.319 kb on + strand, within MMP_RS02445 at 457.334 kb on - strand, within MMP_RS02445 at 457.450 kb on + strand, within MMP_RS02445 at 457.519 kb on - strand, within MMP_RS02445 at 457.560 kb on - strand, within MMP_RS02445 at 457.561 kb on + strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.565 kb on + strand, within MMP_RS02445 at 457.565 kb on + strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.567 kb on + strand, within MMP_RS02445 at 457.567 kb on + strand, within MMP_RS02445 at 457.605 kb on - strand, within MMP_RS02445 at 457.606 kb on + strand, within MMP_RS02445 at 457.611 kb on - strand, within MMP_RS02445 at 457.611 kb on - strand, within MMP_RS02445 at 457.622 kb on - strand, within MMP_RS02445 at 457.675 kb on + strand, within MMP_RS02445 at 457.716 kb on - strand, within MMP_RS02445 at 457.879 kb on + strand, within MMP_RS02445 at 457.919 kb on + strand at 457.932 kb on - strand at 457.942 kb on - strand at 457.943 kb on + strand at 457.996 kb on + strand at 457.996 kb on + strand at 458.048 kb on + strand at 458.048 kb on + strand at 458.048 kb on + strand at 458.054 kb on + strand at 458.054 kb on + strand at 458.064 kb on - strand at 458.087 kb on + strand at 458.098 kb on + strand at 458.136 kb on + strand at 458.136 kb on + strand at 458.214 kb on - strand at 458.231 kb on + strand at 458.250 kb on + strand at 458.308 kb on - strand at 458.347 kb on + strand, within MMP_RS02450 at 458.361 kb on - strand, within MMP_RS02450 at 458.371 kb on - strand, within MMP_RS02450 at 458.392 kb on - strand, within MMP_RS02450 at 458.392 kb on - strand, within MMP_RS02450 at 458.398 kb on + strand, within MMP_RS02450 at 458.398 kb on + strand, within MMP_RS02450 at 458.403 kb on + strand, within MMP_RS02450 at 458.468 kb on + strand, within MMP_RS02450 at 458.532 kb on + strand at 458.628 kb on - strand, within MMP_RS02455 at 458.629 kb on + strand, within MMP_RS02455 at 458.630 kb on - strand, within MMP_RS02455 at 458.760 kb on + strand, within MMP_RS02455 at 458.783 kb on - strand, within MMP_RS02455 at 458.787 kb on - strand, within MMP_RS02455 at 458.787 kb on - strand, within MMP_RS02455 at 458.960 kb on + strand, within MMP_RS02455 at 458.963 kb on - strand, within MMP_RS02455 at 458.974 kb on - strand, within MMP_RS02455 at 458.974 kb on - strand, within MMP_RS02455 at 458.996 kb on + strand, within MMP_RS02455
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Thioridazine 0.05 mM remove 455,803 - -1.0 455,804 + -0.8 455,813 - +0.0 455,813 - +0.3 455,814 + -0.9 455,817 - +0.1 455,817 - +0.1 455,817 - +0.3 455,818 + -0.2 455,822 - -0.2 455,822 - -0.1 455,822 - +0.4 455,823 + +0.9 455,823 + +0.8 455,825 + -0.9 455,825 + -1.2 455,825 + +0.9 455,827 - -1.6 455,835 - -1.3 455,835 - -1.0 455,836 + -0.2 455,836 + -0.2 455,836 + -1.5 455,836 + +0.4 455,840 + +0.2 455,856 + +1.1 455,859 - +0.9 455,860 + +0.1 455,860 + +0.2 455,864 - +1.3 455,865 + +0.7 455,901 - +1.5 456,003 - -0.8 456,009 - +0.9 456,021 + +0.9 456,027 - -0.6 456,028 + +0.5 456,064 - -0.1 456,065 + +0.4 456,065 + +1.0 456,119 - +0.6 456,119 - +2.3 456,128 - +1.1 456,128 - -0.8 456,128 - +0.0 456,173 - -0.0 456,202 + +0.0 456,239 - +1.1 456,239 - -0.3 456,240 + +0.7 456,240 + -1.4 456,240 + +0.9 456,245 + +0.3 456,274 + +1.0 456,274 + -0.1 456,328 - -0.9 456,331 + -0.3 456,475 - -0.4 456,493 - -0.3 456,494 + -0.2 456,550 - +1.0 456,551 + +0.6 456,554 - +0.9 456,554 - -1.0 456,557 + -1.4 456,557 + +0.8 456,559 + +0.2 456,559 + -0.1 456,559 + -0.4 456,559 + -0.6 456,559 + +1.1 456,625 + -0.2 456,655 + -1.1 456,666 - +0.2 456,673 - +0.0 456,674 + -0.6 456,678 - +0.3 456,678 - +1.5 456,678 - -0.6 456,680 - -1.2 456,681 + +0.3 456,736 + -0.3 456,738 - -0.4 456,739 + +1.2 456,755 - +0.4 456,758 + -0.2 456,805 + +0.7 456,975 - MMP_RS02445 0.20 -0.2 457,028 - MMP_RS02445 0.24 +0.2 457,028 - MMP_RS02445 0.24 -1.6 457,028 - MMP_RS02445 0.24 -1.1 457,029 + MMP_RS02445 0.24 +1.4 457,229 + MMP_RS02445 0.39 -0.2 457,239 - MMP_RS02445 0.40 -0.1 457,240 + MMP_RS02445 0.40 +0.2 457,240 + MMP_RS02445 0.40 -0.1 457,243 + MMP_RS02445 0.40 -0.3 457,289 + MMP_RS02445 0.44 -0.3 457,289 + MMP_RS02445 0.44 +0.1 457,318 - MMP_RS02445 0.46 -0.9 457,319 + MMP_RS02445 0.46 -0.2 457,334 - MMP_RS02445 0.47 -1.9 457,450 + MMP_RS02445 0.56 +0.6 457,519 - MMP_RS02445 0.61 +0.6 457,560 - MMP_RS02445 0.64 -1.5 457,561 + MMP_RS02445 0.64 -1.0 457,564 - MMP_RS02445 0.64 +0.5 457,564 - MMP_RS02445 0.64 -1.6 457,564 - MMP_RS02445 0.64 +0.8 457,564 - MMP_RS02445 0.64 -1.3 457,564 - MMP_RS02445 0.64 -0.4 457,565 + MMP_RS02445 0.64 +0.5 457,565 + MMP_RS02445 0.64 +1.0 457,566 - MMP_RS02445 0.64 +1.1 457,566 - MMP_RS02445 0.64 +0.1 457,566 - MMP_RS02445 0.64 -0.5 457,567 + MMP_RS02445 0.64 +0.8 457,567 + MMP_RS02445 0.64 +0.1 457,605 - MMP_RS02445 0.67 +0.7 457,606 + MMP_RS02445 0.67 +2.2 457,611 - MMP_RS02445 0.68 +0.9 457,611 - MMP_RS02445 0.68 -2.1 457,622 - MMP_RS02445 0.69 +0.2 457,675 + MMP_RS02445 0.72 +0.1 457,716 - MMP_RS02445 0.76 +0.8 457,879 + MMP_RS02445 0.88 -0.4 457,919 + -0.3 457,932 - -3.5 457,942 - -1.2 457,943 + -1.5 457,996 + -2.5 457,996 + +0.2 458,048 + +2.1 458,048 + +0.6 458,048 + -0.3 458,054 + +0.7 458,054 + -2.8 458,064 - +1.0 458,087 + -0.5 458,098 + +0.4 458,136 + -0.6 458,136 + -0.7 458,214 - +0.9 458,231 + +0.4 458,250 + +0.2 458,308 - +0.6 458,347 + MMP_RS02450 0.15 -0.4 458,361 - MMP_RS02450 0.22 -0.9 458,371 - MMP_RS02450 0.27 +1.3 458,392 - MMP_RS02450 0.38 -0.6 458,392 - MMP_RS02450 0.38 -0.8 458,398 + MMP_RS02450 0.41 +1.2 458,398 + MMP_RS02450 0.41 -4.7 458,403 + MMP_RS02450 0.44 -0.1 458,468 + MMP_RS02450 0.77 +1.0 458,532 + +0.8 458,628 - MMP_RS02455 0.17 +0.5 458,629 + MMP_RS02455 0.17 -0.8 458,630 - MMP_RS02455 0.17 -0.5 458,760 + MMP_RS02455 0.38 +0.2 458,783 - MMP_RS02455 0.42 +0.0 458,787 - MMP_RS02455 0.42 +0.4 458,787 - MMP_RS02455 0.42 +0.3 458,960 + MMP_RS02455 0.70 +0.7 458,963 - MMP_RS02455 0.71 -0.7 458,974 - MMP_RS02455 0.73 -0.1 458,974 - MMP_RS02455 0.73 +0.2 458,996 + MMP_RS02455 0.76 +2.4
Or see this region's nucleotide sequence